C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinitis pigmentosa 2 (X-linked recessive)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000218340 RP2-001 ENSG00000102218 9606 + X:46836940-46882358 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000218340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000218340 3.997±0.00 3.309±0.00 0.551±0.00 0.711±0.29 2.548±0.60 2.384±0.16 0.865±0.53 2.787±0.39 1.785±0.01 2.045±1.00 0.249±0.23 2.808±0.59 8.080±1.83 2.303±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G6 CIL_0005G6_0001 CGP X:46599252-46882358
CIL_0005G5 CIL_0005G5_0001 CGP X:46836940-47061242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0003779 IEA actin binding
GO:0004550 IEA nucleoside diphosphate kinase activity
GO:0005096 IDA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005814 IEA centriole
GO:0005886 IDA plasma membrane
GO:0006165 IEA nucleoside diphosphate phosphorylation
GO:0006183 IEA GTP biosynthetic process
GO:0006228 IEA UTP biosynthetic process
GO:0006241 IEA CTP biosynthetic process
GO:0006457 TAS protein folding
GO:0006892 IGI post-Golgi vesicle-mediated transport
GO:0007010 IEA cytoskeleton organization
GO:0007601 TAS visual perception
GO:0015031 IEA protein transport
GO:0031410 IGI cytoplasmic vesicle
GO:0036064 IDA ciliary basal body
GO:0043547 IEA positive regulation of GTPase activity
GO:0051082 TAS unfolded protein binding
GO:0070062 IDA extracellular vesicular exosome
GO:1990075 IEA periciliary membrane compartment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033372 Rp2h-001 protein_coding Mus_musculus 0 1325
ENSMUST00000115387 Rp2h-002 protein_coding Mus_musculus 0 1271
ENSMUST00000115391 Rp2h-003 protein_coding Mus_musculus 0 1147
ENSMUST00000133619 Rp2h-004 nonsense_mediated_decay Mus_musculus 0 1046
ENSMUST00000134349 Rp2h-005 nonsense_mediated_decay Mus_musculus 0 1042
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000007 71

Loading