C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034012 Cnot7-001 ENSMUSG00000031601 10090 - 8:40492540-40511754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034012
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034012 5.908±3.05 22.164±1.27 13.021±1.24 20.362±9.80 4.339±1.81 6.330±2.74 5.770±0.74 5.812±1.76 7.786±3.53 9.506±1.20 13.571±0.89 10.905±3.96 10.963±4.30 9.862±4.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000454 CIL_000454_0002 CGP 8:40307458-40510268
CIL_0001VB CIL_0001VB_0002 CGP 8:40423815-40515847
CIL_0001T6 CIL_0001T6_0002 CGP 8:40492540-40551134

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000175 ISS 3'-5'-exoribonuclease activity
GO:0000289 IMP nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 IGI deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003723 IEA RNA binding
GO:0004532 ISS exoribonuclease activity
GO:0004535 IMP poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008284 ISS positive regulation of cell proliferation
GO:0008285 ISS negative regulation of cell proliferation
GO:0030014 IPI CCR4-NOT complex
GO:0031047 IMP gene silencing by RNA
GO:0033962 IGI cytoplasmic mRNA processing body assembly
GO:0043928 ISS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0060213 ISS positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 ISS positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361272 CNOT7-001 protein_coding Homo_sapiens 0 2708
ENST00000429006 CNOT7P1-001 processed_pseudogene Homo_sapiens 0 1170
ENST00000508720 RP11-584P21.4-001 processed_pseudogene Homo_sapiens 0 425
ENST00000518021 CNOT7-005 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000518541 CNOT7-012 protein_coding Homo_sapiens 0 276
ENST00000518885 CNOT7-009 processed_transcript Homo_sapiens 0 292
ENST00000519918 CNOT7-011 protein_coding Homo_sapiens 0 837
ENST00000519954 CNOT7-006 nonsense_mediated_decay Homo_sapiens 0 876
ENST00000519998 CNOT7-003 retained_intron Homo_sapiens 0 315
ENST00000520178 CNOT7-008 protein_coding Homo_sapiens 0 302
ENST00000522062 CNOT7-010 retained_intron Homo_sapiens 0 316
ENST00000523649 CNOT7-004 retained_intron Homo_sapiens 0 486
ENST00000523917 CNOT7-002 protein_coding Homo_sapiens 0 1365
ENST00000524358 CNOT7-007 protein_coding Homo_sapiens 0 778

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