C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebellin 1 precursor protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034076 Cbln1-201 ENSMUSG00000031654 10090 - 8:87468854-87472592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000034076
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000034076 0.014±0.00 0.622±0.22 0.012±0.00 6.785±4.01 0.169±0.06 0.267±0.11 0.109±0.04 0.066±0.01 0.298±0.15 0.536±0.38 1.506±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VO CIL_0002VO_0002 CGP 8:86841139-87472592
CIL_0008WB CIL_0008WB_0002 VISTA 8:86970549-87571379
CIL_0002VP CIL_0002VP_0002 CGP 8:87468854-87589424

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0007157 IGI heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0009306 IMP protein secretion
GO:0021707 IGI cerebellar granule cell differentiation
GO:0030054 IEA cell junction
GO:0042803 IDA protein homodimerization activity
GO:0045202 IDA synapse
GO:0045211 IEA postsynaptic membrane
GO:0051965 IDA positive regulation of synapse assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219197 CBLN1-001 protein_coding Homo_sapiens 0 1456
ENST00000536749 CBLN1-201 protein_coding Homo_sapiens 0 972
ENST00000564786 CBLN1-002 nonsense_mediated_decay Homo_sapiens 0 564

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