C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebellin 1 precursor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000219197 CBLN1-001 ENSG00000102924 9606 - 16:49277917-49281831 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartLungOvaryPlacentaTestisENST00000219197
Transcript ID Adipose Breast Colon Heart Lung Ovary Placenta Testis
ENST00000219197 1.559±0.00 0.647±0.60 0.243±0.00 0.306±0.00 0.037±0.00 0.900±0.86 0.242±0.09 1.894±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VO CIL_0002VO_0001 CGP 16:48538726-49281831
CIL_0008WB CIL_0008WB_0001 VISTA 16:48760555-49361331
CIL_0002VP CIL_0002VP_0001 CGP 16:49277917-49399431

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0009306 IEA protein secretion
GO:0021707 ISS cerebellar granule cell differentiation
GO:0030054 IEA cell junction
GO:0042803 IEA protein homodimerization activity
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0051965 IEA positive regulation of synapse assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034076 Cbln1-201 protein_coding Mus_musculus 0 1456
ENSMUST00000169693 Cbln1-202 protein_coding Mus_musculus 0 1149
ENSDART00000112644 cbln2b-201 protein_coding Danio_rerio 0 243
ENSDART00000136200 cbln2b-001 protein_coding Danio_rerio 0 243

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