C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167208-ENSG00000167207 CGP 9606 16:50666300-50733077
GeneTranscriptPositionBiotype
ENSG00000167207 (NOD2)
nucleotide-binding oligomerization domain containing 2 		ENST00000300589 (NOD2-001) 50697139-50733077 protein_coding
ENST00000524712 (NOD2-008) 50712194-50723374 nonsense_mediated_decay
ENST00000526417 (NOD2-003) 50693603-50710951 processed_transcript
ENST00000527052 (NOD2-009) 50712194-50723374 nonsense_mediated_decay
ENST00000527070 (NOD2-002) 50697140-50710791 nonsense_mediated_decay
ENST00000529633 (NOD2-007) 50712194-50723374 nonsense_mediated_decay
ENST00000531674 (NOD2-004) 50693626-50699933 protein_coding
ENST00000532206 (NOD2-005) 50697140-50710791 processed_transcript
ENST00000534057 (NOD2-010) 50712194-50723374 protein_coding
ENST00000534067 (NOD2-006) 50712194-50723374 nonsense_mediated_decay
ENSG00000167208 (SNX20)
sorting nexin 20 		ENST00000300590 (SNX20-001) 50666300-50681353 protein_coding
ENST00000330943 (SNX20-002) 50671625-50681352 protein_coding
ENST00000423026 (SNX20-003) 50666300-50681312 protein_coding
ENST00000568993 (SNX20-004) 50666558-50681302 nonsense_mediated_decay
ENST00000610485 (SNX20-201) 50673334-50681206 protein_coding
ENSG00000260249 (RP11-401P9.5)
 ENST00000570167 (RP11-401P9.5-001) 50666211-50671578 antisense
ENST00000570241 (RP11-401P9.5-002) 50668855-50671639 antisense
ENSG00000270120 (RP11-327F22.6)
 ENST00000602304 (RP11-327F22.6-001) 50712844-50713589 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0003PS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031662-ENSMUSG00000055994 CGP 10090 8:88626828-88688474
GeneTranscriptPositionBiotype
ENSMUSG00000031662 (Snx20)
sorting nexin 20 		ENSMUST00000034087 (Snx20-201) 88626828-88636128 protein_coding
ENSMUSG00000055994 (Nod2)
nucleotide-binding oligomerization domain containing 2 		ENSMUST00000054324 (Nod2-003) 88647315-88688474 protein_coding
ENSMUST00000109634 (Nod2-002) 88651341-88688474 protein_coding
ENSMUST00000118370 (Nod2-001) 88647315-88688474 protein_coding
ENSMUST00000124091 (Nod2-004) 88647384-88665700 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PS_0001ENSG00000167207ENST00000300589ENST00000524712ENST00000526417ENST00000527052ENST00000527070ENST00000529633ENST00000531674ENST00000532206ENST00000534057ENST00000534067ENSG00000167208ENST00000300590ENST00000330943ENST00000423026ENST00000568993ENST00000610485ENSG00000260249ENST00000570167ENST00000570241ENSG00000270120ENST00000602304CIL_0003PS_0002ENSMUSG00000031662ENSMUST00000034087ENSMUSG00000055994ENSMUST00000054324ENSMUST00000109634ENSMUST00000118370ENSMUST00000124091
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PS_0001ENSG00000167207ENST00000300589ENST00000524712ENST00000527070ENST00000529633ENST00000531674ENST00000534067ENSG00000167208ENST00000300590ENST00000330943ENST00000423026ENST00000568993ENST00000610485ENSG00000260249ENST00000570167ENSG00000270120ENST00000602304CIL_0003PS_0002ENSMUSG00000031662ENSMUST00000034087ENSMUSG00000055994ENSMUST00000054324ENSMUST00000109634ENSMUST00000118370ENSMUST00000124091
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167207 ENST00000300589 N/A 0.181±0.00 0.106±0.00 0.011±0.00 N/A N/A 0.018±0.00 0.015±0.00 0.080±0.00 0.187±0.00 N/A 0.311±0.05 N/A N/A
ENST00000524712 N/A N/A N/A N/A N/A N/A N/A N/A 1.081±0.00 N/A N/A N/A N/A N/A
ENST00000526417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 0.221±0.00 N/A N/A
ENST00000529633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.473±0.00 N/A
ENST00000531674 N/A N/A N/A N/A N/A 0.111±0.00 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000532206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534067 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.913±0.00 N/A N/A N/A N/A
ENSG00000167208 ENST00000300590 0.087±0.00 N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 0.147±0.00 0.082±0.00
ENST00000330943 0.251±0.00 3.778±0.00 0.090±0.00 0.463±0.00 0.947±0.00 0.160±0.00 0.172±0.14 0.212±0.06 0.316±0.00 1.266±0.16 N/A 0.476±0.41 1.236±0.53 N/A
ENST00000423026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 0.086±0.00 N/A N/A
ENST00000568993 N/A N/A 0.114±0.00 N/A 0.180±0.00 0.246±0.00 0.093±0.00 0.158±0.00 0.237±0.13 N/A 0.168±0.04 0.317±0.08 0.423±0.11 N/A
ENST00000610485 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.342±0.00 0.609±0.00 N/A N/A N/A
ENSG00000260249 ENST00000570167 N/A N/A N/A N/A 0.094±0.00 N/A N/A 0.047±0.01 N/A N/A N/A 0.043±0.00 N/A N/A
ENST00000570241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270120 ENST00000602304 N/A 0.048±0.00 N/A 0.050±0.00 N/A 0.198±0.00 0.046±0.00 N/A N/A 0.632±0.15 N/A 0.070±0.02 N/A 0.084±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031662 ENSMUST00000034087 2.272±0.15 0.784±0.31 1.455±0.09 1.118±1.18 18.091±10.54 10.055±1.73 0.588±0.12 0.833±0.29 1.668±1.87 4.371±0.65 0.342±0.56 1.821±0.95 1.541±1.05 0.181±0.09
ENSMUSG00000055994 ENSMUST00000054324 N/A N/A N/A N/A 0.268±0.00 N/A N/A 0.170±0.11 N/A N/A N/A N/A N/A N/A
ENSMUST00000109634 0.431±0.27 0.217±0.09 N/A 0.259±0.00 0.412±0.15 0.201±0.00 0.193±0.03 0.230±0.10 0.041±0.03 0.516±0.00 N/A 0.252±0.08 0.764±0.11 0.064±0.03
ENSMUST00000118370 0.322±0.11 N/A 0.147±0.02 0.056±0.00 0.454±0.20 0.633±0.16 0.343±0.08 0.248±0.12 0.023±0.01 0.660±0.23 0.243±0.07 0.326±0.16 0.282±0.23 0.093±0.00
ENSMUST00000124091 0.316±0.01 0.380±0.16 0.084±0.00 0.053±0.00 0.720±0.20 0.533±0.19 0.159±0.02 0.294±0.09 0.023±0.01 1.134±0.34 N/A 0.441±0.26 0.091±0.00 0.112±0.04

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