C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00090I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs85 VISTA 9606 16:50514444-51115745
GeneTranscriptPositionBiotype
ENSG00000140807 (NKD1)
naked cuticle homolog 1 (Drosophila) 		ENST00000268459 (NKD1-001) 50548330-50640739 protein_coding
ENST00000564336 (NKD1-002) 50548396-50616108 processed_transcript
ENST00000566396 (NKD1-003) 50625225-50633222 retained_intron
ENSG00000167207 (NOD2)
nucleotide-binding oligomerization domain containing 2 		ENST00000300589 (NOD2-001) 50697139-50733077 protein_coding
ENST00000524712 (NOD2-008) 50712194-50723374 nonsense_mediated_decay
ENST00000526417 (NOD2-003) 50693603-50710951 processed_transcript
ENST00000527052 (NOD2-009) 50712194-50723374 nonsense_mediated_decay
ENST00000527070 (NOD2-002) 50697140-50710791 nonsense_mediated_decay
ENST00000529633 (NOD2-007) 50712194-50723374 nonsense_mediated_decay
ENST00000531674 (NOD2-004) 50693626-50699933 protein_coding
ENST00000532206 (NOD2-005) 50697140-50710791 processed_transcript
ENST00000534057 (NOD2-010) 50712194-50723374 protein_coding
ENST00000534067 (NOD2-006) 50712194-50723374 nonsense_mediated_decay
ENSG00000167208 (SNX20)
sorting nexin 20 		ENST00000300590 (SNX20-001) 50666300-50681353 protein_coding
ENST00000330943 (SNX20-002) 50671625-50681352 protein_coding
ENST00000423026 (SNX20-003) 50666300-50681312 protein_coding
ENST00000568993 (SNX20-004) 50666558-50681302 nonsense_mediated_decay
ENST00000610485 (SNX20-201) 50673334-50681206 protein_coding
ENSG00000199771 (RNA5SP426)
RNA, 5S ribosomal pseudogene 426 		ENST00000362901 (RNA5SP426-201) 50869455-50869575 rRNA
ENSG00000260029 (RP11-401P9.1)
 ENST00000569940 (RP11-401P9.1-001) 50551824-50553940 antisense
ENSG00000260042 (CTD-2034I21.1)
 ENST00000569986 (CTD-2034I21.1-001) 50856614-50879278 lincRNA
ENSG00000260249 (RP11-401P9.5)
 ENST00000570167 (RP11-401P9.5-001) 50666211-50671578 antisense
ENST00000570241 (RP11-401P9.5-002) 50668855-50671639 antisense
ENSG00000260620 (RP11-883G14.4)
 ENST00000569009 (RP11-883G14.4-001) 51054728-51056399 lincRNA
ENSG00000261241 (RP11-883G14.1)
 ENST00000567534 (RP11-883G14.1-002) 50884209-50901061 lincRNA
ENST00000570245 (RP11-883G14.1-001) 50884209-50900690 lincRNA
ENSG00000261282 (SOD1P2)
superoxide dismutase 1, soluble pseudogene 2 		ENST00000563903 (SOD1P2-001) 51107571-51108021 processed_pseudogene
ENSG00000261637 (RP11-883G14.2)
 ENST00000563826 (RP11-883G14.2-001) 51017758-51035777 lincRNA
ENST00000568607 (RP11-883G14.2-002) 51024897-51035771 lincRNA
ENSG00000261644 (RP11-327F22.2)
 ENST00000567728 (RP11-327F22.2-001) 50735713-50740716 antisense
ENSG00000261685 (RP11-401P9.4)
 ENST00000563424 (RP11-401P9.4-001) 50645809-50649249 lincRNA
ENSG00000261703 (RP11-327F22.5)
 ENST00000565327 (RP11-327F22.5-001) 50806668-50807629 lincRNA
ENSG00000263082 (CTD-2034I21.2)
 ENST00000576842 (CTD-2034I21.2-001) 50880209-50884101 lincRNA
ENSG00000270120 (RP11-327F22.6)
 ENST00000602304 (RP11-327F22.6-001) 50712844-50713589 sense_intronic
ENSG00000278909 (RP11-401P9.7)
 ENST00000623140 (RP11-401P9.7-001) 50555355-50558719 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00090I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs85 VISTA 10090 8:88457981-89059109
GeneTranscriptPositionBiotype
ENSMUSG00000031661 (Nkd1)
naked cuticle 1 homolog (Drosophila) 		ENSMUST00000034086 (Nkd1-201) 88521344-88594887 protein_coding
ENSMUST00000169179 (Nkd1-202) 88527633-88594887 protein_coding
ENSMUSG00000031662 (Snx20)
sorting nexin 20 		ENSMUST00000034087 (Snx20-201) 88626828-88636128 protein_coding
ENSMUSG00000031665 (Sall1)
sal-like 1 (Drosophila) 		ENSMUST00000034090 (Sall1-201) 89027248-89044162 protein_coding
ENSMUSG00000036712 (Cyld)
cylindromatosis (turban tumor syndrome) 		ENSMUST00000043526 (Cyld-201) 88697028-88751945 protein_coding
ENSMUST00000098519 (Cyld-202) 88705222-88751945 protein_coding
ENSMUST00000109626 (Cyld-203) 88705222-88751945 protein_coding
ENSMUSG00000055994 (Nod2)
nucleotide-binding oligomerization domain containing 2 		ENSMUST00000054324 (Nod2-003) 88647315-88688474 protein_coding
ENSMUST00000109634 (Nod2-002) 88651341-88688474 protein_coding
ENSMUST00000118370 (Nod2-001) 88647315-88688474 protein_coding
ENSMUST00000124091 (Nod2-004) 88647384-88665700 retained_intron
ENSMUSG00000056772 (Rps6-ps2)
ribosomal protein S6, pseudogene 2 		ENSMUST00000079841 (Rps6-ps2-201) 88806391-88807140 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140807 ENST00000268459 0.373±0.00 1.003±0.00 N/A 0.637±0.38 0.410±0.25 1.128±0.00 0.058±0.00 0.629±0.52 0.505±0.32 1.288±0.36 0.062±0.00 1.234±0.30 1.588±0.39 1.810±0.14
ENST00000564336 N/A N/A N/A N/A N/A N/A N/A 2.382±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566396 N/A N/A N/A N/A N/A N/A N/A 0.649±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000167207 ENST00000300589 N/A 0.181±0.00 0.106±0.00 0.011±0.00 N/A N/A 0.018±0.00 0.015±0.00 0.080±0.00 0.187±0.00 N/A 0.311±0.05 N/A N/A
ENST00000524712 N/A N/A N/A N/A N/A N/A N/A N/A 1.081±0.00 N/A N/A N/A N/A N/A
ENST00000526417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 0.221±0.00 N/A N/A
ENST00000529633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.473±0.00 N/A
ENST00000531674 N/A N/A N/A N/A N/A 0.111±0.00 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000532206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534067 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.913±0.00 N/A N/A N/A N/A
ENSG00000167208 ENST00000300590 0.087±0.00 N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 0.147±0.00 0.082±0.00
ENST00000330943 0.251±0.00 3.778±0.00 0.090±0.00 0.463±0.00 0.947±0.00 0.160±0.00 0.172±0.14 0.212±0.06 0.316±0.00 1.266±0.16 N/A 0.476±0.41 1.236±0.53 N/A
ENST00000423026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 0.086±0.00 N/A N/A
ENST00000568993 N/A N/A 0.114±0.00 N/A 0.180±0.00 0.246±0.00 0.093±0.00 0.158±0.00 0.237±0.13 N/A 0.168±0.04 0.317±0.08 0.423±0.11 N/A
ENST00000610485 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.342±0.00 0.609±0.00 N/A N/A N/A
ENSG00000199771 ENST00000362901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.708±0.00
ENSG00000260029 ENST00000569940 N/A 0.085±0.00 N/A 0.040±0.02 0.195±0.00 N/A N/A N/A 0.046±0.00 0.250±0.00 N/A 0.157±0.07 N/A 0.041±0.00
ENSG00000260042 ENST00000569986 N/A N/A N/A 0.041±0.00 N/A N/A N/A 0.057±0.00 0.049±0.00 N/A N/A N/A N/A 0.100±0.00
ENSG00000260249 ENST00000570167 N/A N/A N/A N/A 0.094±0.00 N/A N/A 0.047±0.01 N/A N/A N/A 0.043±0.00 N/A N/A
ENST00000570241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260620 ENST00000569009 0.217±0.00 0.828±0.00 N/A 0.388±0.00 0.264±0.00 N/A 0.296±0.00 N/A 0.055±0.00 0.226±0.00 0.355±0.00 N/A N/A 0.307±0.01
ENSG00000261241 ENST00000567534 N/A N/A N/A N/A N/A 0.345±0.00 N/A 0.048±0.00 0.155±0.00 N/A N/A 0.072±0.00 0.042±0.00 0.091±0.03
ENST00000570245 N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A 0.109±0.00 0.105±0.00 0.176±0.00 0.051±0.00 0.079±0.00 0.152±0.00
ENSG00000261282 ENST00000563903 N/A N/A N/A N/A N/A N/A N/A 1.315±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000261637 ENST00000563826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.277±0.00
ENST00000568607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.240±0.10
ENSG00000261644 ENST00000567728 0.013±0.00 0.720±0.00 N/A 0.072±0.00 0.027±0.00 N/A 0.071±0.00 0.078±0.00 0.052±0.02 0.044±0.00 N/A 0.129±0.00 0.129±0.08 0.201±0.08
ENSG00000261685 ENST00000563424 0.633±0.00 1.863±0.00 0.216±0.00 1.463±0.94 0.672±0.12 1.244±0.98 0.154±0.00 1.261±0.99 0.371±0.12 0.979±0.25 0.108±0.01 1.293±0.76 0.335±0.23 1.278±0.77
ENSG00000261703 ENST00000565327 N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A 0.246±0.00 N/A N/A 0.616±0.05
ENSG00000263082 ENST00000576842 N/A N/A 0.133±0.00 0.029±0.01 N/A N/A N/A 0.060±0.00 0.829±0.00 0.046±0.00 N/A 0.045±0.03 0.019±0.00 0.039±0.00
ENSG00000270120 ENST00000602304 N/A 0.048±0.00 N/A 0.050±0.00 N/A 0.198±0.00 0.046±0.00 N/A N/A 0.632±0.15 N/A 0.070±0.02 N/A 0.084±0.03
ENSG00000278909 ENST00000623140 0.008±0.00 0.110±0.00 0.092±0.00 0.054±0.00 0.186±0.12 0.090±0.01 0.043±0.03 0.029±0.00 0.041±0.00 0.238±0.19 N/A 0.244±0.29 0.094±0.00 0.087±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031661 ENSMUST00000034086 11.146±2.13 14.203±0.76 18.668±1.33 4.954±1.95 3.627±1.15 8.739±0.57 0.541±0.16 2.075±0.23 1.408±0.93 29.519±11.21 0.174±0.04 9.999±4.42 1.436±0.72 0.578±0.16
ENSMUST00000169179 N/A 2.483±0.00 N/A N/A 1.661±0.00 N/A N/A N/A N/A N/A 0.147±0.00 3.223±1.65 N/A N/A
ENSMUSG00000031662 ENSMUST00000034087 2.272±0.15 0.784±0.31 1.455±0.09 1.118±1.18 18.091±10.54 10.055±1.73 0.588±0.12 0.833±0.29 1.668±1.87 4.371±0.65 0.342±0.56 1.821±0.95 1.541±1.05 0.181±0.09
ENSMUSG00000031665 ENSMUST00000034090 3.827±3.96 0.011±0.00 0.013±0.00 4.270±2.87 0.034±0.02 2.007±0.46 0.332±0.02 5.109±3.53 4.386±3.89 0.174±0.06 0.021±0.01 4.387±1.88 3.608±0.90 0.179±0.09
ENSMUSG00000036712 ENSMUST00000043526 1.923±0.32 1.314±0.00 0.520±0.00 N/A N/A 0.471±0.10 0.586±0.00 1.062±0.00 0.491±0.03 N/A N/A N/A 1.069±0.00 0.371±0.17
ENSMUST00000098519 N/A 4.784±0.00 N/A 12.567±0.00 N/A N/A N/A N/A 0.252±0.00 N/A 1.266±0.25 1.643±0.81 N/A N/A
ENSMUST00000109626 1.728±0.45 3.245±1.03 3.043±0.00 7.995±0.00 1.058±0.22 2.118±0.93 1.227±0.00 N/A 1.089±0.50 1.244±0.00 1.867±0.35 2.606±1.92 3.674±2.12 3.234±0.00
ENSMUSG00000055994 ENSMUST00000054324 N/A N/A N/A N/A 0.268±0.00 N/A N/A 0.170±0.11 N/A N/A N/A N/A N/A N/A
ENSMUST00000109634 0.431±0.27 0.217±0.09 N/A 0.259±0.00 0.412±0.15 0.201±0.00 0.193±0.03 0.230±0.10 0.041±0.03 0.516±0.00 N/A 0.252±0.08 0.764±0.11 0.064±0.03
ENSMUST00000118370 0.322±0.11 N/A 0.147±0.02 0.056±0.00 0.454±0.20 0.633±0.16 0.343±0.08 0.248±0.12 0.023±0.01 0.660±0.23 0.243±0.07 0.326±0.16 0.282±0.23 0.093±0.00
ENSMUST00000124091 0.316±0.01 0.380±0.16 0.084±0.00 0.053±0.00 0.720±0.20 0.533±0.19 0.159±0.02 0.294±0.09 0.023±0.01 1.134±0.34 N/A 0.441±0.26 0.091±0.00 0.112±0.04
ENSMUSG00000056772 ENSMUST00000079841 0.060±0.00 0.143±0.00 0.116±0.03 0.100±0.12 N/A N/A N/A N/A 0.021±0.01 N/A N/A 0.253±0.06 0.382±0.46 0.078±0.03

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