C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: component of oligomeric golgi complex 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034203 Cog4-001 ENSMUSG00000031753 10090 + 8:110847034-110882227 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034203
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034203 27.209±5.42 13.509±4.45 16.190±1.13 14.359±2.42 18.314±4.86 12.161±3.87 14.576±2.01 16.659±3.18 11.333±1.62 12.101±0.53 19.359±0.61 18.298±6.48 20.824±3.16 24.495±3.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CK CIL_0000CK_0002 CGP 8:110741829-110846803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0006890 IEA retrograde vesicle-mediated transport, Golgi to ER
GO:0007030 IEA Golgi organization
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017119 IEA Golgi transport complex
GO:0048213 IEA Golgi vesicle prefusion complex stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323786 COG4-001 protein_coding Homo_sapiens 0 3035
ENST00000393612 COG4-201 protein_coding Homo_sapiens 0 2102
ENST00000482252 COG4-002 nonsense_mediated_decay Homo_sapiens 0 1797
ENST00000524584 COG4-007 nonsense_mediated_decay Homo_sapiens 0 505
ENST00000526700 COG4-005 retained_intron Homo_sapiens 0 843
ENST00000530160 COG4-008 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000530314 COG4-003 retained_intron Homo_sapiens 0 1801
ENST00000534772 COG4-006 protein_coding Homo_sapiens 0 752
ENST00000562200 COG4-015 retained_intron Homo_sapiens 0 1051
ENST00000564315 COG4-018 retained_intron Homo_sapiens 0 532
ENST00000564415 COG4-012 nonsense_mediated_decay Homo_sapiens 0 2619
ENST00000564653 COG4-014 protein_coding Homo_sapiens 0 641
ENST00000567244 COG4-016 retained_intron Homo_sapiens 0 289

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