C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034301 Rab3a-001 ENSMUSG00000031840 10090 + 8:70754711-70758635 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034301
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034301 12.728±3.73 48.372±3.77 10.834±0.90 114.803±17.45 10.156±3.02 13.312±1.59 25.584±1.51 10.195±0.74 3.099±0.77 14.442±2.30 10.807±1.84 17.703±6.64 2.415±0.48 2.148±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BA CIL_0006BA_0002 CGP 8:70723720-70758677

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001669 IDA acrosomal vesicle
GO:0003016 IMP respiratory system process
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007005 IMP mitochondrion organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007274 IMP neuromuscular synaptic transmission
GO:0007409 IMP axonogenesis
GO:0008021 IDA synaptic vesicle
GO:0009791 IMP post-embryonic development
GO:0015031 IEA protein transport
GO:0016079 IMP:ISS synaptic vesicle exocytosis
GO:0016188 IMP synaptic vesicle maturation
GO:0017157 IDA regulation of exocytosis
GO:0030324 IMP lung development
GO:0030424 ISS axon
GO:0031630 IMP regulation of synaptic vesicle fusion to presynaptic membrane
GO:0036465 ISS synaptic vesicle recycling
GO:0043195 IDA terminal bouton
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity
GO:0048489 TAS synaptic vesicle transport
GO:0048790 IMP maintenance of presynaptic active zone structure
GO:0050975 IMP sensory perception of touch
GO:0051602 IMP response to electrical stimulus
GO:1900271 TAS regulation of long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132687 rab3c-001 protein_coding Danio_rerio 0 381
ENST00000222120 RAB3D-001 protein_coding Homo_sapiens 0 462
ENST00000222256 RAB3A-001 protein_coding Homo_sapiens 0 835
ENST00000282878 RAB3C-001 protein_coding Homo_sapiens 0 361
ENST00000381158 RAB3C-004 processed_transcript Homo_sapiens 1e-35 154
ENST00000464076 RAB3A-002 protein_coding Homo_sapiens 0.000000000005 77
ENST00000481914 RAB3A-003 protein_coding Homo_sapiens 0 455
ENST00000515410 RAB3A-004 retained_intron Homo_sapiens 0 298
ENST00000589655 RAB3D-002 protein_coding Homo_sapiens 0 462

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