C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3D, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222120 RAB3D-001 ENSG00000105514 9606 - 19:11322046-11339668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000222120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000222120 5.279±0.00 4.846±0.00 0.923±0.00 2.881±1.52 5.010±2.45 5.126±4.50 1.962±0.00 6.057±0.00 1.419±0.00 2.556±0.76 6.447±2.79 5.665±1.64 8.422±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016R CIL_00016R_0002 CGP 19:11322046-11346518

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005886 IEA plasma membrane
GO:0006184 TAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA exocytosis
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017157 IEA regulation of exocytosis
GO:0018125 IEA peptidyl-cysteine methylation
GO:0030133 IEA transport vesicle
GO:0031489 IPI myosin V binding
GO:0042588 IEA zymogen granule
GO:0051020 IEA GTPase binding
GO:0070062 IDA extracellular vesicular exosome
GO:1903307 IMP positive regulation of regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122211 Rab3d-002 protein_coding Mus_musculus 0 765
ENSMUST00000115351 Rab3d-001 protein_coding Mus_musculus 0 765
ENSMUST00000110093 Rab3a-004 protein_coding Mus_musculus 0 462
ENSMUST00000110090 Rab3a-003 protein_coding Mus_musculus 0 462
ENSMUST00000110092 Rab3a-002 protein_coding Mus_musculus 0 462
ENSMUST00000034301 Rab3a-001 protein_coding Mus_musculus 0 462
ENSMUST00000143118 Rab3a-005 protein_coding Mus_musculus 0 309
ENSMUST00000132491 Brap-003 retained_intron Mus_musculus 0.00008 55

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