C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222256 RAB3A-001 ENSG00000105649 9606 - 19:18196784-18204074 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000222256
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000222256 0.766±0.00 1.445±0.00 92.710±65.88 1.037±0.45 2.915±0.00 3.374±2.76 2.043±0.00 2.470±0.00 12.916±7.33 1.468±0.00 2.379±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DR CIL_0004DR_0002 CGP 19:18173162-18196948

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001669 IEA acrosomal vesicle
GO:0001671 IEA ATPase activator activity
GO:0003016 IEA respiratory system process
GO:0003924 IMP:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005886 TAS plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007005 IEA mitochondrion organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0007274 IEA neuromuscular synaptic transmission
GO:0007409 IEA axonogenesis
GO:0008021 ISS synaptic vesicle
GO:0008022 IEA protein C-terminus binding
GO:0009791 IEA post-embryonic development
GO:0014047 TAS glutamate secretion
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016079 ISS synaptic vesicle exocytosis
GO:0016188 IEA synaptic vesicle maturation
GO:0017157 IEA regulation of exocytosis
GO:0030324 IEA lung development
GO:0030424 ISS axon
GO:0031489 IPI myosin V binding
GO:0031630 ISS regulation of synaptic vesicle fusion to presynaptic membrane
GO:0031982 IDA vesicle
GO:0032781 IEA positive regulation of ATPase activity
GO:0036465 ISS synaptic vesicle recycling
GO:0043195 ISS terminal bouton
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0045054 TAS constitutive secretory pathway
GO:0045921 TAS positive regulation of exocytosis
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048790 IEA maintenance of presynaptic active zone structure
GO:0050975 IEA sensory perception of touch
GO:0051020 IEA GTPase binding
GO:0051117 IEA ATPase binding
GO:0051602 IEA response to electrical stimulus
GO:0060201 TAS clathrin-sculpted acetylcholine transport vesicle membrane
GO:0060203 TAS clathrin-sculpted glutamate transport vesicle membrane
GO:0061202 TAS clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane
GO:0070083 TAS clathrin-sculpted monoamine transport vesicle membrane
GO:1903307 IMP positive regulation of regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110093 Rab3a-004 protein_coding Mus_musculus 0 843
ENSMUST00000110090 Rab3a-003 protein_coding Mus_musculus 0 837
ENSMUST00000110092 Rab3a-002 protein_coding Mus_musculus 0 837
ENSMUST00000034301 Rab3a-001 protein_coding Mus_musculus 0 835
ENSMUST00000003502 Rab3b-003 protein_coding Mus_musculus 0 496
ENSMUST00000106650 Rab3b-001 protein_coding Mus_musculus 0 496
ENSMUST00000143118 Rab3a-005 protein_coding Mus_musculus 0 464
ENSMUST00000106651 Rab3b-002 protein_coding Mus_musculus 0 401
ENSDART00000062820 rab3b-201 protein_coding Danio_rerio 0 305
ENSDART00000143376 rab3b-001 protein_coding Danio_rerio 0 305

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