C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034339 Cdh5-201 ENSMUSG00000031871 10090 + 8:104101625-104144502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034339 76.954±26.45 32.084±2.87 9.001±2.02 5.169±1.95 35.911±8.57 8.664±0.42 36.311±1.93 19.055±0.51 7.139±2.64 247.550±18.17 13.927±3.77 27.202±3.27 174.271±105.62 1.139±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BQ CIL_0003BQ_0003 CGP 8:104101625-104219092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001955 IMP blood vessel maturation
GO:0005102 IEA receptor binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005912 IDA adherens junction
GO:0005923 IDA tight junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008013 IEA beta-catenin binding
GO:0008285 IGI negative regulation of cell proliferation
GO:0016021 IEA integral component of membrane
GO:0016337 IC single organismal cell-cell adhesion
GO:0019903 IPI protein phosphatase binding
GO:0030054 IDA cell junction
GO:0044325 IEA ion channel binding
GO:0071944 IDA cell periphery
GO:2000114 IMP regulation of establishment of cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341529 CDH5-001 protein_coding Homo_sapiens 0 1784
ENST00000539168 CDH5-002 protein_coding Homo_sapiens 0 1007
ENST00000565334 CDH5-008 nonsense_mediated_decay Homo_sapiens 0 1243
ENST00000614547 CDH5-201 protein_coding Homo_sapiens 0 767

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