C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 5, type 2 (vascular endothelium)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341529 CDH5-001 ENSG00000179776 9606 + 16:66366630-66404786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341529 49.075±0.00 16.693±0.00 0.638±0.00 3.378±3.12 17.177±14.56 9.420±8.70 13.172±11.88 6.447±2.67 1.873±0.14 7.120±0.00 8.076±0.00 4.893±1.96 103.766±57.39 10.774±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SB CIL_0006SB_0002 CGP 16:64943753-66404786
CIL_0003BQ CIL_0003BQ_0002 CGP 16:66366622-66493529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001955 IEA blood vessel maturation
GO:0005102 IPI receptor binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA:TAS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005912 IEA adherens junction
GO:0005923 IEA tight junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008013 IPI beta-catenin binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0016020 IEA:TAS membrane
GO:0016021 IEA integral component of membrane
GO:0019903 IEA protein phosphatase binding
GO:0030054 ISS cell junction
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0044325 IPI ion channel binding
GO:0045216 TAS cell-cell junction organization
GO:0071944 IEA cell periphery
GO:2000114 IMP regulation of establishment of cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034339 Cdh5-201 protein_coding Mus_musculus 0 1784

Loading