C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 5, type 2 (vascular endothelium)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000614547 CDH5-201 ENSG00000179776 9606 + 16:66366622-66404782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000614547
Transcript ID Adipose Adrenal Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000614547 16.335±0.00 9.451±0.00 7.435±0.00 1.387±0.00 1.619±0.00 18.198±0.00 2.513±0.00 2.059±0.00 55.554±0.00 3.908±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SB CIL_0006SB_0002 CGP 16:64943753-66404786
CIL_0003BQ CIL_0003BQ_0002 CGP 16:66366622-66493529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IPI receptor binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008013 IPI beta-catenin binding
GO:0016020 IEA:TAS membrane
GO:0016021 IEA integral component of membrane
GO:0030054 ISS cell junction
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0044325 IPI ion channel binding
GO:0045216 TAS cell-cell junction organization
GO:2000114 IMP regulation of establishment of cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034339 Cdh5-201 protein_coding Mus_musculus 0 767

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