C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 12 (potassium/chloride transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316341 SLC12A4-001 ENSG00000124067 9606 - 16:67943474-67968694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316341
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316341 8.661±0.00 1.424±0.00 4.857±3.65 9.614±0.00 3.717±0.00 3.671±0.00 1.844±0.00 6.683±5.80 2.945±1.70 8.983±5.56 10.411±2.52 3.640±1.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000030 CIL_000030_0001 CGP 16:67934502-67944131
CIL_00003H CIL_00003H_0001 CGP 16:67939750-67969601
CIL_00003P CIL_00003P_0001 CGP 16:67943474-67980829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005765 IDA lysosomal membrane
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 TAS:IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0006821 TAS chloride transport
GO:0006884 TAS cell volume homeostasis
GO:0015377 IEA cation:chloride symporter activity
GO:0015379 IEA potassium:chloride symporter activity
GO:0016020 IEA:TAS membrane
GO:0016021 IEA integral component of membrane
GO:0019901 IPI protein kinase binding
GO:0055085 IEA:TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116429 Slc12a4-001 protein_coding Mus_musculus 0 4174
ENSMUST00000034370 Slc12a4-201 protein_coding Mus_musculus 0 4156
ENSDART00000057258 slc12a5a-201 protein_coding Danio_rerio 0 654
ENSDART00000157129 slc12a5a-001 protein_coding Danio_rerio 0 654
ENSMUST00000141326 Slc12a4-004 retained_intron Mus_musculus 0 628
ENSMUST00000132231 Slc12a4-003 protein_coding Mus_musculus 0 577
ENSMUST00000143381 Slc12a4-002 retained_intron Mus_musculus 0 303
ENSMUST00000038896 Lcat-001 protein_coding Mus_musculus 0 224
ENSMUST00000017900 Slc12a7-201 protein_coding Mus_musculus 6e-36 158

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