C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interactor of little elongation complex ELL subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034761 Narg2-001 ENSMUSG00000032235 10090 + 9:69397906-69433122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034761
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034761 0.964±0.16 2.652±0.22 1.833±1.21 0.918±0.00 1.399±0.30 0.517±0.21 0.657±0.12 2.138±1.17 0.802±0.13 0.583±0.20 2.283±1.04 2.609±1.22 0.824±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GZ CIL_0005GZ_0002 CGP 9:68653786-69433122
CIL_0007LQ CIL_0007LQ_0002 UCNEbase 9:69347863-69845139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0008023 ISS transcription elongation factor complex
GO:0015030 ISS Cajal body
GO:0035327 ISS transcriptionally active chromatin
GO:0035363 ISS histone locus body
GO:0042795 ISS snRNA transcription from RNA polymerase II promoter
GO:0042796 ISS snRNA transcription from RNA polymerase III promoter
GO:0045945 ISS positive regulation of transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261520 ICE2-001 protein_coding Homo_sapiens 0 1256
ENST00000483823 ICE2P2-001 processed_pseudogene Homo_sapiens 0 950
ENST00000512800 ICE2P1-001 processed_pseudogene Homo_sapiens 0 1003
ENST00000558121 ICE2-007 retained_intron Homo_sapiens 0 782
ENST00000558181 ICE2-002 nonsense_mediated_decay Homo_sapiens 0 1212
ENST00000558512 ICE2-005 protein_coding Homo_sapiens 0 1033
ENST00000558654 ICE2-010 processed_transcript Homo_sapiens 1.4013e-45 187
ENST00000560072 ICE2-015 protein_coding Homo_sapiens 0 470
ENST00000560406 ICE2-014 protein_coding Homo_sapiens 0 346
ENST00000560520 ICE2-009 protein_coding Homo_sapiens 0 331
ENST00000560668 ICE2-008 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187
ENST00000560895 ICE2-012 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000561087 ICE2-013 processed_transcript Homo_sapiens 7e-27 124
ENST00000561114 ICE2-004 protein_coding Homo_sapiens 0 1164
ENST00000561124 ICE2-018 processed_transcript Homo_sapiens 0 545
ENST00000561328 ICE2-006 retained_intron Homo_sapiens 0 193
ENST00000561446 ICE2-011 nonsense_mediated_decay Homo_sapiens 0 363

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