C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034991 Tbx18-001 ENSMUSG00000032419 10090 - 9:87702800-87731260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034991
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034991 1.035±0.65 0.656±0.21 1.188±0.78 0.881±0.69 2.431±0.62 0.046±0.02 0.475±0.25 0.179±0.10 0.013±0.01 0.247±0.18 0.099±0.03 0.089±0.06 0.079±0.06 0.204±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066X CIL_00066X_0002 CGP 9:87189577-87731260
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_00066W CIL_00066W_0002 CGP 9:87702800-88372092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001756 IMP somitogenesis
GO:0002053 IMP positive regulation of mesenchymal cell proliferation
GO:0003163 IMP sinoatrial node development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007605 IMP sensory perception of sound
GO:0009948 IMP anterior/posterior axis specification
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0022409 IMP positive regulation of cell-cell adhesion
GO:0030154 IMP cell differentiation
GO:0048646 IMP anatomical structure formation involved in morphogenesis
GO:0050679 IMP positive regulation of epithelial cell proliferation
GO:0051145 IMP smooth muscle cell differentiation
GO:0072189 IGI ureter development
GO:0090103 IMP cochlea morphogenesis
GO:2000729 IGI positive regulation of mesenchymal cell proliferation involved in ureter development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369663 TBX18-001 protein_coding Homo_sapiens 0 2401
ENST00000606325 TBX18-003 protein_coding Homo_sapiens 0 887
ENST00000606521 TBX18-004 processed_transcript Homo_sapiens 0 889
ENST00000606621 TBX18-002 protein_coding Homo_sapiens 0 316
ENST00000606784 TBX18-006 protein_coding Homo_sapiens 0 1013

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