C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369663 TBX18-001 ENSG00000112837 9606 - 6:84732602-84764519 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000369663
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000369663 1.451±0.00 1.052±0.00 0.107±0.05 0.856±0.51 0.592±0.00 0.474±0.00 0.556±0.54 0.203±0.00 0.076±0.00 0.506±0.18 0.314±0.05 0.663±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066X CIL_00066X_0001 CGP 6:84124241-84764519
CIL_0007K0 CIL_0007K0_0001 UCNEbase 6:84361462-85614404
CIL_00066W CIL_00066W_0001 CGP 6:84687351-85495791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000976 ISS transcription regulatory region sequence-specific DNA binding
GO:0001106 ISS RNA polymerase II transcription corepressor activity
GO:0001756 IEA somitogenesis
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003163 IEA sinoatrial node development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA:ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007605 IEA sensory perception of sound
GO:0009948 IEA anterior/posterior axis specification
GO:0016331 IEA morphogenesis of embryonic epithelium
GO:0022409 IEA positive regulation of cell-cell adhesion
GO:0030154 IEA cell differentiation
GO:0042803 ISS protein homodimerization activity
GO:0046982 ISS protein heterodimerization activity
GO:0048646 IEA anatomical structure formation involved in morphogenesis
GO:0050679 IEA positive regulation of epithelial cell proliferation
GO:0051145 IEA smooth muscle cell differentiation
GO:0060829 ISS negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation
GO:0072189 IEA ureter development
GO:0090103 IEA cochlea morphogenesis
GO:2000729 IEA positive regulation of mesenchymal cell proliferation involved in ureter development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034991 Tbx18-001 protein_coding Mus_musculus 0 2401
ENSMUST00000186698 Tbx18-002 processed_transcript Mus_musculus 0 435

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