C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035648 Atg12-201 ENSMUSG00000032905 10090 - 18:46732417-46741579 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035648
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035648 20.746±4.45 10.320±0.45 21.310±0.41 18.514±6.12 14.349±2.85 12.243±1.17 6.543±1.97 17.986±1.19 10.163±1.72 10.645±4.13 7.879±0.49 17.086±4.75 29.853±8.94 9.781±3.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L5 CIL_0004L5_0002 CGP 18:46713205-46741579
CIL_0004L6 CIL_0004L6_0002 CGP 18:46732417-46790826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000422 IBA mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006501 IBA C-terminal protein lipidation
GO:0006914 TAS autophagy
GO:0006995 IBA cellular response to nitrogen starvation
GO:0016020 IEA membrane
GO:0019776 IBA Atg8 ligase activity
GO:0034045 IDA pre-autophagosomal structure membrane
GO:0034274 IBA Atg12-Atg5-Atg16 complex
GO:0043234 IEA protein complex
GO:0044804 IBA nucleophagy
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379594 ATG12-007 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000500945 ATG12-003 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000505252 ATG12-005 retained_intron Homo_sapiens 1.4013e-45 189
ENST00000505993 ATG12-009 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000507793 ATG12-013 retained_intron Homo_sapiens 0 189
ENST00000508464 ATG12-012 retained_intron Homo_sapiens 0 189
ENST00000509598 ATG12-004 processed_transcript Homo_sapiens 0 368
ENST00000509910 ATG12-001 protein_coding Homo_sapiens 0 473
ENST00000511984 ATG12-011 retained_intron Homo_sapiens 0 368
ENST00000513167 ATG12-008 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000513292 ATG12-014 processed_transcript Homo_sapiens 0 189
ENST00000513322 ATG12-002 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000578331 RP11-766H1.1-001 processed_pseudogene Homo_sapiens 0 438

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