C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000040_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167291-ENSG00000141519 CGP 9606 17:79932343-80100613
GeneTranscriptPositionBiotype
ENSG00000141519 (CCDC40)
coiled-coil domain containing 40 		ENST00000269318 (CCDC40-002) 80036652-80067901 protein_coding
ENST00000374876 (CCDC40-003) 80036658-80066770 protein_coding
ENST00000374877 (CCDC40-201) 80036632-80090819 protein_coding
ENST00000397545 (CCDC40-001) 80036636-80100613 protein_coding
ENST00000571028 (CCDC40-012) 80058925-80067288 protein_coding
ENST00000572083 (CCDC40-010) 80036664-80040535 retained_intron
ENST00000572253 (CCDC40-005) 80081443-80097934 retained_intron
ENST00000572270 (CCDC40-008) 80036652-80040165 processed_transcript
ENST00000573474 (CCDC40-011) 80040005-80050224 nonsense_mediated_decay
ENST00000573903 (CCDC40-014) 80088105-80092145 processed_transcript
ENST00000574099 (CCDC40-007) 80036661-80040187 protein_coding
ENST00000574799 (CCDC40-004) 80048370-80100604 retained_intron
ENST00000574933 (CCDC40-016) 80087703-80088212 retained_intron
ENST00000575431 (CCDC40-013) 80087514-80095337 retained_intron
ENST00000576033 (CCDC40-009) 80036661-80040105 protein_coding
ENST00000576241 (CCDC40-015) 80036677-80047454 retained_intron
ENSG00000167291 (TBC1D16)
TBC1 domain family, member 16 		ENST00000310924 (TBC1D16-001) 79932343-80035848 protein_coding
ENST00000340848 (TBC1D16-003) 79937908-79950836 protein_coding
ENST00000570373 (TBC1D16-008) 79944045-79950834 protein_coding
ENST00000571872 (TBC1D16-005) 79950571-79993634 protein_coding
ENST00000572862 (TBC1D16-004) 79943856-79950828 protein_coding
ENST00000573782 (TBC1D16-006) 79947648-79950830 protein_coding
ENST00000574241 (TBC1D16-009) 79947645-79952013 protein_coding
ENST00000574427 (TBC1D16-007) 79947695-79950833 protein_coding
ENST00000576768 (TBC1D16-002) 79935792-79950857 protein_coding
ENSG00000261978 (CTD-2529O21.2)
 ENST00000570952 (CTD-2529O21.2-002) 80023931-80026107 antisense
ENST00000575404 (CTD-2529O21.2-001) 80023894-80026107 antisense
ENSG00000262172 (CTD-2529O21.1)
 ENST00000576632 (CTD-2529O21.1-001) 79991944-79992841 sense_intronic

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_000040_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039976-ENSMUSG00000039963 CGP 10090 11:119143045-119265236
GeneTranscriptPositionBiotype
ENSMUSG00000039963 (Ccdc40)
coiled-coil domain containing 40 		ENSMUST00000035935 (Ccdc40-001) 119228572-119265212 protein_coding
ENSMUST00000053440 (Ccdc40-002) 119229129-119262900 protein_coding
ENSMUST00000125724 (Ccdc40-007) 119262872-119264306 retained_intron
ENSMUST00000126652 (Ccdc40-003) 119258927-119265236 processed_transcript
ENSMUST00000133788 (Ccdc40-005) 119253553-119264436 retained_intron
ENSMUST00000143066 (Ccdc40-004) 119238718-119251809 retained_intron
ENSMUST00000147037 (Ccdc40-011) 119228605-119231644 processed_transcript
ENSMUST00000150358 (Ccdc40-010) 119228599-119231728 processed_transcript
ENSMUST00000155683 (Ccdc40-006) 119259766-119263120 retained_intron
ENSMUSG00000039976 (Tbc1d16)
TBC1 domain family, member 16 		ENSMUST00000036113 (Tbc1d16-001) 119143045-119228499 protein_coding
ENSMUST00000125856 (Tbc1d16-002) 119210641-119221976 protein_coding
ENSMUSG00000085548 (Gm11753)
predicted gene 11753 		ENSMUST00000151091 (Gm11753-001) 119183953-119184516 sense_intronic
ENSMUSG00000087404 (Gm11752)
predicted gene 11752 		ENSMUST00000143291 (Gm11752-001) 119220160-119222473 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000040_0001ENSG00000141519ENST00000269318ENST00000374876ENST00000374877ENST00000397545ENST00000572083ENST00000572253ENST00000572270ENST00000573474ENST00000574799ENST00000575431ENST00000576241ENSG00000167291ENST00000310924ENST00000340848ENST00000574427ENST00000576768ENSG00000261978ENST00000570952ENST00000575404ENSG00000262172ENST00000576632CIL_000040_0002ENSMUSG00000039963ENSMUST00000035935ENSMUST00000053440ENSMUST00000125724ENSMUST00000126652ENSMUST00000133788ENSMUST00000143066ENSMUST00000147037ENSMUST00000150358ENSMUST00000155683ENSMUSG00000039976ENSMUST00000036113ENSMUSG00000085548ENSMUST00000151091ENSMUSG00000087404ENSMUST00000143291
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141519 ENST00000269318 N/A N/A N/A N/A N/A N/A 0.436±0.00 0.896±0.00 0.195±0.00 1.301±0.00 N/A N/A 0.102±0.00 N/A
ENST00000374876 N/A 0.464±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 0.494±0.00 0.335±0.00 N/A
ENST00000374877 N/A N/A N/A 0.333±0.00 N/A 0.052±0.00 N/A N/A N/A N/A N/A 1.032±0.00 0.037±0.00 N/A
ENST00000397545 N/A 0.240±0.00 N/A 0.472±0.00 N/A 0.296±0.00 0.166±0.00 0.830±0.00 0.177±0.05 2.752±0.00 0.098±0.00 3.705±0.00 N/A 5.716±1.66
ENST00000571028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572083 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572253 N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A
ENST00000572270 N/A N/A N/A N/A N/A N/A 0.298±0.00 N/A N/A N/A 0.446±0.00 0.865±0.00 N/A N/A
ENST00000573474 N/A N/A N/A 1.776±0.00 N/A 1.339±0.00 0.715±0.00 0.738±0.00 0.961±0.00 N/A N/A 2.729±0.00 0.329±0.13 N/A
ENST00000573903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574799 N/A N/A N/A N/A 0.880±0.00 N/A 0.154±0.00 N/A 0.120±0.04 0.190±0.00 N/A 1.300±0.97 0.083±0.00 5.966±4.53
ENST00000574933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.287±0.00 0.138±0.00 N/A
ENST00000576033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A
ENSG00000167291 ENST00000310924 5.033±0.00 3.092±0.00 1.008±0.00 0.650±0.29 6.399±5.13 1.440±0.76 1.503±0.00 3.815±0.00 2.130±1.52 1.361±0.00 0.403±0.00 3.017±2.26 0.767±0.45 1.082±0.75
ENST00000340848 N/A N/A 1.115±0.00 1.254±0.00 1.234±0.00 N/A 0.273±0.00 0.223±0.00 0.581±0.00 0.619±0.00 N/A 1.651±0.00 0.771±0.00 N/A
ENST00000570373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574427 N/A N/A N/A N/A N/A N/A N/A N/A 2.838±0.00 N/A N/A N/A N/A N/A
ENST00000576768 10.234±0.00 3.583±0.00 0.948±0.00 1.304±0.64 14.597±0.00 3.599±0.00 1.056±0.87 4.624±0.00 2.097±1.22 1.243±0.92 0.634±0.26 3.025±1.56 1.650±1.18 1.488±0.00
ENSG00000261978 ENST00000570952 N/A 0.774±0.00 N/A N/A 0.058±0.00 2.679±0.00 N/A 0.460±0.00 1.419±0.00 N/A 0.242±0.00 N/A N/A 0.151±0.00
ENST00000575404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A
ENSG00000262172 ENST00000576632 0.083±0.00 0.091±0.00 0.466±0.00 N/A N/A N/A N/A 0.655±0.00 N/A N/A N/A 0.342±0.00 N/A 0.591±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039963 ENSMUST00000035935 0.016±0.01 0.062±0.04 N/A 1.235±0.10 0.011±0.00 N/A N/A 0.033±0.01 0.022±0.00 N/A 0.014±0.00 N/A 0.028±0.00 N/A
ENSMUST00000053440 N/A 0.038±0.00 0.029±0.00 0.842±0.28 0.022±0.01 0.028±0.00 0.092±0.06 0.030±0.00 0.011±0.00 0.548±0.00 0.013±0.00 4.419±4.04 0.206±0.14 28.267±31.32
ENSMUST00000125724 N/A 0.963±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126652 0.016±0.00 0.111±0.06 0.163±0.06 1.898±0.12 0.094±0.06 0.206±0.09 0.096±0.06 0.050±0.04 0.168±0.15 1.551±0.43 0.035±0.02 3.490±1.09 0.514±0.25 16.711±4.86
ENSMUST00000133788 0.144±0.07 0.173±0.00 0.170±0.00 N/A 0.097±0.04 0.138±0.01 0.147±0.00 0.075±0.02 N/A N/A N/A N/A N/A N/A
ENSMUST00000143066 N/A 0.135±0.06 N/A N/A 0.042±0.00 N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000147037 N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000150358 N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155683 N/A N/A N/A N/A 0.486±0.00 0.504±0.00 N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A
ENSMUSG00000039976 ENSMUST00000036113 5.802±1.85 3.660±1.05 7.501±0.96 22.603±13.12 5.051±1.30 5.031±1.35 11.719±1.67 9.508±3.17 2.421±1.40 7.181±0.35 7.024±1.38 8.742±1.98 4.032±2.24 0.434±0.17
ENSMUST00000125856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085548 ENSMUST00000151091 0.148±0.02 N/A 0.035±0.00 0.060±0.00 N/A N/A N/A 0.130±0.01 0.211±0.06 N/A N/A 0.236±0.00 0.197±0.15 9.928±3.95
ENSMUSG00000087404 ENSMUST00000143291 0.111±0.00 N/A 0.022±0.00 N/A 0.089±0.00 0.510±0.20 1.040±0.40 2.236±0.43 0.638±0.43 N/A 3.122±0.78 0.405±0.27 N/A N/A

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