C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370339 YTHDF1-001 ENSG00000149658 9606 - 20:63195429-63216234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370339 17.472±0.00 17.204±0.00 0.367±0.00 26.749±0.00 15.580±0.00 5.932±3.66 5.137±3.88 15.677±0.00 5.467±4.69 14.887±0.00 10.275±8.30 14.256±4.76 13.596±2.07 14.883±5.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O2 CIL_0001O2_0001 CGP 20:63005927-63216234
CIL_0001NY CIL_0001NY_0001 CGP 20:63195429-63240507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding
GO:1990247 IDA N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037299 Ythdf1-001 protein_coding Mus_musculus 0 2337
ENSMUST00000108876 Ythdf1-002 protein_coding Mus_musculus 0 2084
ENSMUST00000124666 Ythdf1-003 protein_coding Mus_musculus 0 697
ENSDART00000122294 ythdf3-001 protein_coding Danio_rerio 0 425

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