C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosome binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037875 Rrbp1-001 ENSMUSG00000027422 10090 - 2:143985853-144011263 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryENSMUST00000037875
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000037875 46.543±3.09 23.915±3.53 31.896±13.95 9.059±0.00 15.820±4.38 16.173±0.00 22.306±8.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0002 VISTA 2:143876906-144478692
CIL_0002D9 CIL_0002D9_0002 CGP 2:143915320-144011263
CIL_0002DA CIL_0002DA_0002 CGP 2:143947395-144073979

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007165 ISS signal transduction
GO:0015031 IEA protein transport
GO:0030176 ISS integral component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246043 RRBP1-201 protein_coding Homo_sapiens 0 1184
ENST00000360807 RRBP1-001 protein_coding Homo_sapiens 0 953
ENST00000377807 RRBP1-202 protein_coding Homo_sapiens 0 606
ENST00000377813 RRBP1-002 protein_coding Homo_sapiens 0 1195
ENST00000398782 RRBP1-003 protein_coding Homo_sapiens 0 1048

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