C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosome binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377813 RRBP1-002 ENSG00000125844 9606 - 20:17613678-17682233 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377813 18.027±0.00 8.815±0.00 2.536±0.00 4.487±4.21 9.756±4.44 6.508±2.80 1.511±1.12 8.217±3.69 10.394±7.60 5.719±2.59 0.187±0.00 22.855±12.07 31.942±4.90 9.277±3.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002D9 CIL_0002D9_0001 CGP 20:17569863-17682295
CIL_0002DA CIL_0002DA_0001 CGP 20:17613678-17735871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0015031 IEA protein transport
GO:0030176 IEA integral component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016072 Rrbp1-002 protein_coding Mus_musculus 0 3158
ENSMUST00000037875 Rrbp1-001 protein_coding Mus_musculus 0 1195
ENSMUST00000136068 Rrbp1-005 processed_transcript Mus_musculus 0 935
ENSMUST00000154649 Rrbp1-003 processed_transcript Mus_musculus 0 719
ENSMUST00000140511 Rrbp1-007 processed_transcript Mus_musculus 0 542
ENSMUST00000135367 Rrbp1-008 processed_transcript Mus_musculus 0 300
ENSMUST00000155539 Rrbp1-006 processed_transcript Mus_musculus 0 207

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