C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002DA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125844-ENSG00000125888 CGP 9606 20:17613678-17735871
GeneTranscriptPositionBiotype
ENSG00000125844 (RRBP1)
ribosome binding protein 1 		ENST00000246043 (RRBP1-201) 17613678-17660507 protein_coding
ENST00000360807 (RRBP1-001) 17613678-17682295 protein_coding
ENST00000377807 (RRBP1-202) 17613678-17682283 protein_coding
ENST00000377813 (RRBP1-002) 17613678-17682233 protein_coding
ENST00000398782 (RRBP1-003) 17659606-17682295 protein_coding
ENST00000455029 (RRBP1-007) 17614128-17682060 protein_coding
ENST00000468428 (RRBP1-004) 17613678-17619817 retained_intron
ENST00000470422 (RRBP1-005) 17613678-17623330 protein_coding
ENST00000495501 (RRBP1-006) 17627360-17658932 nonsense_mediated_decay
ENST00000610403 (RRBP1-203) 17613678-17659973 protein_coding
ENST00000620641 (RRBP1-008) 17641445-17643085 retained_intron
ENSG00000125888 (BANF2)
barrier to autointegration factor 2 		ENST00000246090 (BANF2-002) 17699960-17735871 protein_coding
ENST00000377805 (BANF2-001) 17699948-17735871 protein_coding
ENST00000427254 (BANF2-003) 17699942-17725151 protein_coding
ENST00000467330 (BANF2-004) 17731179-17735798 processed_transcript
ENST00000545418 (BANF2-005) 17693672-17735860 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0002DA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027422-ENSMUSG00000037307 CGP 10090 2:143947395-144073979
GeneTranscriptPositionBiotype
ENSMUSG00000027422 (Rrbp1)
ribosome binding protein 1 		ENSMUST00000016072 (Rrbp1-002) 143947395-144011263 protein_coding
ENSMUST00000037875 (Rrbp1-001) 143985853-144011263 protein_coding
ENSMUST00000132434 (Rrbp1-004) 143960706-143967593 processed_transcript
ENSMUST00000135367 (Rrbp1-008) 143948128-143949736 processed_transcript
ENSMUST00000136068 (Rrbp1-005) 143964839-143983165 processed_transcript
ENSMUST00000140511 (Rrbp1-007) 143950492-143955182 processed_transcript
ENSMUST00000154649 (Rrbp1-003) 143947395-143952281 processed_transcript
ENSMUST00000155539 (Rrbp1-006) 143956383-143957645 processed_transcript
ENSMUSG00000037307 (Banf2)
barrier to autointegration factor 2 		ENSMUST00000037722 (Banf2-002) 144033059-144073979 protein_coding
ENSMUST00000110032 (Banf2-001) 144033102-144073979 protein_coding
ENSMUSG00000086384 (Banf2os)
barrier to autointegration factor 2, opposite strand 		ENSMUST00000124061 (Banf2os-001) 144059138-144068806 antisense
ENSMUST00000145504 (Banf2os-002) 144059565-144068783 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002DA_0001ENSG00000125844ENST00000246043ENST00000360807ENST00000377807ENST00000377813ENST00000398782ENST00000455029ENST00000468428ENST00000470422ENST00000495501ENST00000610403ENST00000620641ENSG00000125888ENST00000246090ENST00000377805ENST00000427254ENST00000467330ENST00000545418CIL_0002DA_0002ENSMUSG00000027422ENSMUST00000016072ENSMUST00000037875ENSMUST00000132434ENSMUST00000135367ENSMUST00000136068ENSMUST00000140511ENSMUST00000154649ENSMUST00000155539ENSMUSG00000037307ENSMUST00000037722ENSMUST00000110032ENSMUSG00000086384ENSMUST00000124061ENSMUST00000145504
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002DA_0001ENSG00000125844ENST00000246043ENST00000360807ENST00000377807ENST00000377813ENST00000398782ENST00000455029ENST00000610403ENSG00000125888ENST00000246090ENST00000377805ENST00000427254ENST00000467330ENST00000545418CIL_0002DA_0002ENSMUSG00000027422ENSMUST00000016072ENSMUST00000037875ENSMUST00000132434ENSMUST00000135367ENSMUST00000140511ENSMUST00000154649ENSMUSG00000037307ENSMUST00000037722ENSMUST00000110032ENSMUSG00000086384ENSMUST00000124061ENSMUST00000145504
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125844 ENST00000246043 8.880±0.00 10.052±0.00 N/A 4.788±0.00 6.030±0.00 6.252±0.00 3.637±0.00 12.846±0.00 22.411±0.00 20.280±0.00 4.445±0.00 38.869±7.06 75.966±15.92 12.777±0.80
ENST00000360807 9.377±0.00 8.017±0.00 N/A 2.184±1.87 N/A 6.407±0.00 N/A 15.512±0.00 N/A 10.433±0.00 N/A N/A N/A N/A
ENST00000377807 N/A N/A N/A N/A N/A 2.527±0.00 N/A 4.710±0.00 N/A N/A N/A N/A N/A N/A
ENST00000377813 18.027±0.00 8.815±0.00 2.536±0.00 4.487±4.21 9.756±4.44 6.508±2.80 1.511±1.12 8.217±3.69 10.394±7.60 5.719±2.59 0.187±0.00 22.855±12.07 31.942±4.90 9.277±3.34
ENST00000398782 N/A N/A N/A 0.865±0.00 N/A 6.156±0.00 0.635±0.00 9.756±0.00 3.058±0.00 N/A 0.483±0.00 8.157±0.00 N/A N/A
ENST00000455029 17.170±0.00 23.023±0.00 N/A N/A 12.788±7.31 7.707±3.26 N/A 8.754±0.00 1.846±0.00 17.341±0.00 N/A 58.368±48.12 108.184±0.00 23.448±7.94
ENST00000468428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610403 14.671±0.00 11.321±0.00 1.181±0.00 10.194±0.00 20.778±0.00 16.941±0.00 1.780±0.00 32.069±0.00 35.400±0.00 23.253±0.00 3.573±0.00 30.869±0.00 N/A 26.336±0.00
ENST00000620641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000125888 ENST00000246090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.783±1.69
ENST00000377805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.062±0.00
ENST00000427254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A 5.749±0.00
ENST00000467330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A
ENST00000545418 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027422 ENSMUST00000016072 17.169±6.66 6.171±2.44 16.021±4.01 8.629±4.42 11.679±4.44 43.684±4.75 7.333±1.33 12.773±0.53 27.984±7.95 24.202±2.84 3.521±1.31 28.670±11.80 72.650±25.06 15.308±6.33
ENSMUST00000037875 N/A 46.543±3.09 N/A N/A 23.915±3.53 31.896±13.95 N/A 9.059±0.00 15.820±4.38 16.173±0.00 N/A 22.306±8.06 N/A N/A
ENSMUST00000132434 N/A N/A N/A N/A 1.564±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 211.735±0.00 315.225±8.94 96.625±0.00
ENSMUST00000136068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 91.709±0.00
ENSMUST00000154649 22.370±4.88 20.043±0.00 26.260±1.82 7.360±0.00 19.111±4.37 52.674±9.39 9.718±2.43 18.639±2.65 29.099±4.96 16.142±0.00 5.453±1.32 36.358±20.75 93.876±48.42 N/A
ENSMUST00000155539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037307 ENSMUST00000037722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A 0.296±0.00 37.646±9.81
ENSMUST00000110032 N/A N/A 0.032±0.00 N/A 0.154±0.02 N/A 0.131±0.01 N/A N/A N/A N/A N/A 1.316±1.27 61.201±21.36
ENSMUSG00000086384 ENSMUST00000124061 0.050±0.00 N/A 0.023±0.00 0.102±0.00 N/A 0.101±0.00 0.900±0.46 0.049±0.00 0.026±0.01 0.066±0.01 N/A 0.053±0.01 0.096±0.04 0.413±0.20
ENSMUST00000145504 N/A N/A N/A N/A N/A N/A 0.519±0.37 N/A 0.034±0.00 0.194±0.00 N/A N/A 0.498±0.00 0.353±0.00

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