C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosome binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027422 Rrbp1 10090 - 2:143947395-144011263 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016072 Rrbp1-002 143947395-144011263 protein_coding
  ENSMUST00000037875 Rrbp1-001 143985853-144011263 protein_coding
  ENSMUST00000132434 Rrbp1-004 143960706-143967593 processed_transcript
  ENSMUST00000135367 Rrbp1-008 143948128-143949736 processed_transcript
  ENSMUST00000136068 Rrbp1-005 143964839-143983165 processed_transcript
  ENSMUST00000140511 Rrbp1-007 143950492-143955182 processed_transcript
  ENSMUST00000154649 Rrbp1-003 143947395-143952281 processed_transcript
  ENSMUST00000155539 Rrbp1-006 143956383-143957645 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016072ENSMUST00000037875ENSMUST00000132434ENSMUST00000135367ENSMUST00000140511ENSMUST00000154649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016072 17.169±6.66 6.171±2.44 16.021±4.01 8.629±4.42 11.679±4.44 43.684±4.75 7.333±1.33 12.773±0.53 27.984±7.95 24.202±2.84 3.521±1.31 28.670±11.80 72.650±25.06 15.308±6.33
ENSMUST00000037875 N/A 46.543±3.09 N/A N/A 23.915±3.53 31.896±13.95 N/A 9.059±0.00 15.820±4.38 16.173±0.00 N/A 22.306±8.06 N/A N/A
ENSMUST00000132434 N/A N/A N/A N/A 1.564±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 211.735±0.00 315.225±8.94 96.625±0.00
ENSMUST00000140511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 91.709±0.00
ENSMUST00000154649 22.370±4.88 20.043±0.00 26.260±1.82 7.360±0.00 19.111±4.37 52.674±9.39 9.718±2.43 18.639±2.65 29.099±4.96 16.142±0.00 5.453±1.32 36.358±20.75 93.876±48.42 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0002 VISTA 2:143876906-144478692
CIL_0002D9 CIL_0002D9_0002 CGP 2:143915320-144011263
CIL_0002DA CIL_0002DA_0002 CGP 2:143947395-144073979

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0007165 ISS signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013763 rrbp1a ribosome binding protein 1 homolog a (dog) protein_coding Danio_rerio
ENSDARG00000041703 rrbp1b ribosome binding protein 1 homolog b (dog) protein_coding Danio_rerio
ENSG00000125844 RRBP1 ribosome binding protein 1 protein_coding Homo_sapiens

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