C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosome binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360807 RRBP1-001 ENSG00000125844 9606 - 20:17613678-17682295 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLungENST00000360807
Transcript ID Adipose Adrenal Brain Colon Kidney Lung
ENST00000360807 9.377±0.00 8.017±0.00 2.184±1.87 6.407±0.00 15.512±0.00 10.433±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002D9 CIL_0002D9_0001 CGP 20:17569863-17682295
CIL_0002DA CIL_0002DA_0001 CGP 20:17613678-17735871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0004872 TAS receptor activity
GO:0005783 IDA endoplasmic reticulum
GO:0005840 TAS ribosome
GO:0006412 TAS translation
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016072 Rrbp1-002 protein_coding Mus_musculus 0 2536
ENSMUST00000037875 Rrbp1-001 protein_coding Mus_musculus 0 953
ENSMUST00000136068 Rrbp1-005 processed_transcript Mus_musculus 0 929
ENSMUST00000154649 Rrbp1-003 processed_transcript Mus_musculus 0 719
ENSMUST00000140511 Rrbp1-007 processed_transcript Mus_musculus 0 542
ENSMUST00000135367 Rrbp1-008 processed_transcript Mus_musculus 0 300
ENSMUST00000155539 Rrbp1-006 processed_transcript Mus_musculus 0 207

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