C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037923 Rbm24-201 ENSMUSG00000038132 10090 + 13:46418300-46431090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037923
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037923 7.803±7.85 5.271±0.42 13.989±1.10 2.121±0.84 6.011±6.48 1.772±0.55 55.009±7.92 0.495±0.02 0.040±0.04 3.169±0.91 50.869±4.86 5.965±3.98 0.068±0.09 0.193±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C9 CIL_0009C9_0002 VISTA 13:46271320-46874349
CIL_0008JF CIL_0008JF_0002 VISTA 13:46271337-46874342
CIL_0003RR CIL_0003RR_0002 CGP 13:46273721-46431090
CIL_0008B7 CIL_0008B7_0002 VISTA 13:46332291-46935792
CIL_0003RO CIL_0003RO_0002 CGP 13:46418300-46649642

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0010830 IMP regulation of myotube differentiation
GO:0030154 IEA cell differentiation
GO:0043488 IMP regulation of mRNA stability

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318204 RBM24-002 protein_coding Homo_sapiens 0 1009
ENST00000379052 RBM24-001 protein_coding Homo_sapiens 0 1387
ENST00000425446 RBM24-008 protein_coding Homo_sapiens 0 798
ENST00000503965 RBM24-009 protein_coding Homo_sapiens 0 638
ENST00000504055 RBM24-007 processed_transcript Homo_sapiens 0 449
ENST00000508508 RBM24-006 processed_transcript Homo_sapiens 0 774
ENST00000509686 RBM24-004 protein_coding Homo_sapiens 0 774
ENST00000510826 RBM24-005 processed_transcript Homo_sapiens 0 754

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