C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: junctophilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038382 Jph1-001 ENSMUSG00000042686 10090 - 1:16994938-17097889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038382 0.435±0.17 0.108±0.05 5.158±0.18 0.470±0.22 2.013±1.82 0.348±0.24 1.733±0.42 0.259±0.13 0.124±0.04 0.646±0.25 30.632±2.91 0.821±0.56 0.146±0.05 0.228±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OK CIL_0002OK_0002 CGP 1:16688051-17097889
CIL_00008Q CIL_00008Q_0003 CGP 1:16964560-17164271

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0007517 IMP muscle organ development
GO:0008307 IMP structural constituent of muscle
GO:0014701 IDA junctional sarcoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0016529 IDA sarcoplasmic reticulum
GO:0030018 IDA Z disc
GO:0030314 IDA junctional membrane complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342232 JPH1-001 protein_coding Homo_sapiens 0 2614
ENST00000518195 JPH1-004 processed_transcript Homo_sapiens 0 448
ENST00000519947 JPH1-003 nonsense_mediated_decay Homo_sapiens 0 1875
ENST00000520797 GDAP1-008 processed_transcript Homo_sapiens 4e-16 90
ENST00000521096 GDAP1-007 processed_transcript Homo_sapiens 0 198

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