C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: junctophilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342232 JPH1-001 ENSG00000104369 9606 - 8:74234700-74321328 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342232
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342232 0.237±0.00 0.183±0.00 3.672±0.00 2.522±0.00 0.409±0.00 2.682±0.00 0.585±0.00 0.397±0.00 0.528±0.08 20.971±7.06 1.554±0.00 0.329±0.00 0.720±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OK CIL_0002OK_0001 CGP 8:73991352-74321328
CIL_00008Q CIL_00008Q_0002 CGP 8:74234700-74488872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005886 IEA plasma membrane
GO:0007517 IEA muscle organ development
GO:0008307 IEA structural constituent of muscle
GO:0014701 TAS junctional sarcoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0030018 IEA Z disc
GO:0030314 NAS junctional membrane complex
GO:0060314 TAS regulation of ryanodine-sensitive calcium-release channel activity
GO:0060402 TAS calcium ion transport into cytosol

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038382 Jph1-001 protein_coding Mus_musculus 0 2614
ENSMUST00000186024 Jph1-002 nonsense_mediated_decay Mus_musculus 0 534
ENSMUST00000109425 Jph2-201 protein_coding Mus_musculus 3e-24 119
ENSMUST00000017961 Jph2-001 protein_coding Mus_musculus 3e-24 119

Loading