C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycerophosphodiester phosphodiesterase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038791 Gde1-001 ENSMUSG00000033917 10090 - 7:118688545-118705778 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038791 58.259±2.04 193.738±36.53 55.620±4.71 50.120±11.70 67.337±23.04 82.790±12.42 22.536±2.62 85.227±11.27 22.962±3.12 105.400±21.55 25.789±3.64 93.359±29.31 30.293±14.02 58.534±19.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MY CIL_0006MY_0002 CGP 7:118597297-118705778
CIL_0006MZ CIL_0006MZ_0002 CGP 7:118688545-118737024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005887 ISS integral component of plasma membrane
GO:0006071 IEA glycerol metabolic process
GO:0006629 IEA lipid metabolic process
GO:0007186 ISO G-protein coupled receptor signaling pathway
GO:0008889 ISS glycerophosphodiester phosphodiesterase activity
GO:0016021 IEA integral component of membrane
GO:0046872 IEA metal ion binding
GO:0047395 IEA glycerophosphoinositol glycerophosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353258 GDE1-001 protein_coding Homo_sapiens 0 1177
ENST00000563645 GDE1-005 retained_intron Homo_sapiens 0 405
ENST00000564172 GDE1-002 nonsense_mediated_decay Homo_sapiens 0 1151

Loading