C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038900 Pds5b-201 ENSMUSG00000034021 10090 + 5:150673827-150810667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038900
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038900 1.539±0.63 0.798±0.25 2.091±0.23 1.487±0.67 0.973±0.42 1.148±0.33 1.016±0.35 0.625±0.28 1.019±0.32 0.596±0.08 1.606±0.72 0.991±0.00 0.795±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FL CIL_0006FL_0002 CGP 5:150608007-150810690
CIL_0000UY CIL_0000UY_0002 CGP 5:150673739-150993809

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000154435 pds5b-001 protein_coding Danio_rerio 0 2041
ENSDART00000087246 pds5b-201 protein_coding Danio_rerio 0 2039
ENST00000315596 PDS5B-006 protein_coding Homo_sapiens 0 6602
ENST00000447833 PDS5B-012 protein_coding Homo_sapiens 0 1040
ENST00000450460 PDS5B-007 nonsense_mediated_decay Homo_sapiens 0 5411
ENST00000474274 PDS5B-010 retained_intron Homo_sapiens 0 499
ENST00000481616 PDS5B-004 retained_intron Homo_sapiens 0 440
ENST00000482955 PDS5B-011 retained_intron Homo_sapiens 0 577
ENST00000493653 PDS5B-008 retained_intron Homo_sapiens 0 442
ENST00000498550 PDS5B-009 retained_intron Homo_sapiens 0 2006

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