C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein of the cerebellum 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039118 Zic5-001 ENSMUSG00000041703 10090 - 14:122456795-122465677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainKidneyLiverLungOvaryPlacentaTestisENSMUST00000039118
Transcript ID Adipose Adrenal Bladder Brain Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000039118 0.241±0.01 0.017±0.01 0.002±0.00 1.860±1.23 0.006±0.00 0.004±0.00 0.010±0.00 0.031±0.02 0.049±0.03 2.052±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093F CIL_00093F_0002 VISTA 14:121953729-122558284
CIL_0007LI CIL_0007LI_0002 UCNEbase 14:122256414-122883962
CIL_0004FW CIL_0004FW_0003 CGP 14:122456795-122479852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0030154 IMP cell differentiation
GO:0030900 IMP forebrain development
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267294 ZIC5-001 protein_coding Homo_sapiens 0 1716
ENST00000376335 ZIC2-001 protein_coding Homo_sapiens 0 407
ENST00000421812 ZNF697-001 protein_coding Homo_sapiens 0.000002 60
ENST00000620342 ZIC2-201 protein_coding Homo_sapiens 0 407

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