C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Zic family member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000267294 ZIC5-001 ENSG00000139800 9606 - 13:99962964-99971909 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastMuscleOvaryPlacentaTestisENST00000267294
Transcript ID Adrenal Brain Breast Muscle Ovary Placenta Testis
ENST00000267294 0.022±0.00 0.478±0.05 0.018±0.00 0.005±0.00 0.285±0.24 0.019±0.00 1.440±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093F CIL_00093F_0001 VISTA 13:99386191-99989823
CIL_0004FV CIL_0004FV_0002 CGP 13:99606669-99971909
CIL_0007LI CIL_0007LI_0001 UCNEbase 13:99687864-100523501
CIL_0004FW CIL_0004FW_0002 CGP 13:99962964-99986773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IEA neural tube closure
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030154 IEA cell differentiation
GO:0030900 IEA forebrain development
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039118 Zic5-001 protein_coding Mus_musculus 0 1716
ENSMUST00000118330 Gm12241-001 processed_pseudogene Mus_musculus 0 1033
ENSMUST00000143084 Zic5-002 processed_transcript Mus_musculus 0 789
ENSMUST00000186616 RP24-79F8.2-001 processed_pseudogene Mus_musculus 8e-35 154
ENSDART00000022204 zic5-001 protein_coding Danio_rerio 0.00000000000003 86
ENSMUST00000143597 Zfp407-002 processed_transcript Mus_musculus 0.00008 55
ENSMUST00000125763 Zfp407-001 protein_coding Mus_musculus 0.00008 55

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