C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Zic family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376335 ZIC2-001 ENSG00000043355 9606 + 13:99981772-99986773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainKidneyOvaryPlacentaTestisENST00000376335
Transcript ID Adipose Adrenal Brain Kidney Ovary Placenta Testis
ENST00000376335 0.007±0.00 0.104±0.00 1.712±1.25 0.015±0.00 0.326±0.18 0.100±0.05 0.743±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093F CIL_00093F_0001 VISTA 13:99386191-99989823
CIL_0007LI CIL_0007LI_0001 UCNEbase 13:99687864-100523501
CIL_0004FW CIL_0004FW_0002 CGP 13:99962964-99986773
CIL_0004G2 CIL_0004G2_0002 CGP 13:99981772-100530435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IEA neural tube closure
GO:0003677 ISS DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0007417 IEA central nervous system development
GO:0007420 TAS brain development
GO:0007601 ISS visual perception
GO:0030154 IEA cell differentiation
GO:0031290 IEA retinal ganglion cell axon guidance
GO:0031490 ISS chromatin DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0048066 IEA developmental pigmentation
GO:0051091 ISS positive regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075888 Zic2-001 protein_coding Mus_musculus 0 2556
ENSMUST00000065360 Zic1-002 protein_coding Mus_musculus 0 689
ENSMUST00000034927 Zic1-001 protein_coding Mus_musculus 0 689
ENSDART00000010774 zic2a-001 protein_coding Danio_rerio 0 651
ENSMUST00000137059 Zic2-002 retained_intron Mus_musculus 0 472
ENSMUST00000039118 Zic5-001 protein_coding Mus_musculus 0 407
ENSMUST00000118330 Gm12241-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000066384 Zic4-008 protein_coding Mus_musculus 0 381
ENSMUST00000172858 Zic4-010 retained_intron Mus_musculus 0 381
ENSMUST00000173933 Zic4-003 protein_coding Mus_musculus 0 381
ENSMUST00000172646 Zic4-001 protein_coding Mus_musculus 0 381
ENSMUST00000173121 Zic1-003 processed_transcript Mus_musculus 0 274
ENSMUST00000170572 Zic4-005 retained_intron Mus_musculus 0 267
ENSMUST00000174611 Zic4-004 retained_intron Mus_musculus 0 267
ENSMUST00000173054 Zic4-011 protein_coding Mus_musculus 3e-32 145
ENSMUST00000174212 Zic4-007 protein_coding Mus_musculus 0.000000002 69

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