C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: talin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039662 Tln2-201 ENSMUSG00000052698 10090 - 9:67221138-67539392 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039662 6.917±2.41 3.602±0.18 1.021±0.28 1.613±0.44 4.660±0.79 2.626±0.60 3.090±0.84 6.987±0.78 0.345±0.16 2.358±0.30 3.708±0.98 4.522±1.85 1.996±1.25 4.055±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521
CIL_0005H2 CIL_0005H2_0002 CGP 9:67022590-67559703

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IEA ruffle
GO:0003779 IEA actin binding
GO:0005158 IEA insulin receptor binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005916 IDA fascia adherens
GO:0005925 IEA focal adhesion
GO:0007016 IEA cytoskeletal anchoring at plasma membrane
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000136555 tln2a-001 protein_coding Danio_rerio 0 3485
ENSDART00000023584 TLN2 (2 of 2)-201 protein_coding Danio_rerio 0 3367
ENSDART00000018142 tln2a-002 protein_coding Danio_rerio 0 625
ENSDART00000134068 tln2a-003 protein_coding Danio_rerio 0 204
ENST00000306829 TLN2-201 protein_coding Homo_sapiens 0 9734
ENST00000472902 TLN2-003 protein_coding Homo_sapiens 0 1463
ENST00000474847 TLN2-005 retained_intron Homo_sapiens 0 848
ENST00000489129 TLN2-002 retained_intron Homo_sapiens 0 4126
ENST00000494733 TLN2-004 protein_coding Homo_sapiens 0 5315
ENST00000559174 TLN2-010 retained_intron Homo_sapiens 0 660
ENST00000561311 TLN2-001 protein_coding Homo_sapiens 0 9762

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