C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: talin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040025 Tln2-202 ENSMUSG00000052698 10090 - 9:67217087-67559703 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000040025
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000040025 4.353±0.65 1.711±0.11 1.641±0.85 1.301±0.73 2.405±0.68 0.154±0.01 1.709±0.99 3.992±1.89 2.329±0.91 0.326±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521
CIL_0005H2 CIL_0005H2_0002 CGP 9:67022590-67559703

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IEA ruffle
GO:0003779 IEA actin binding
GO:0005158 IEA insulin receptor binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005916 IDA fascia adherens
GO:0005925 IEA focal adhesion
GO:0007016 IEA cytoskeletal anchoring at plasma membrane
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000136555 tln2a-001 protein_coding Danio_rerio 0 3485
ENSDART00000023584 TLN2 (2 of 2)-201 protein_coding Danio_rerio 0 3367
ENSDART00000018142 tln2a-002 protein_coding Danio_rerio 0 625
ENSDART00000134068 tln2a-003 protein_coding Danio_rerio 0 204
ENST00000306829 TLN2-201 protein_coding Homo_sapiens 0 9865
ENST00000472902 TLN2-003 protein_coding Homo_sapiens 0 1463
ENST00000474847 TLN2-005 retained_intron Homo_sapiens 0 848
ENST00000489129 TLN2-002 retained_intron Homo_sapiens 0 4257
ENST00000494733 TLN2-004 protein_coding Homo_sapiens 0 5315
ENST00000559174 TLN2-010 retained_intron Homo_sapiens 0 660
ENST00000561311 TLN2-001 protein_coding Homo_sapiens 0 9893

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