C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 2 (liprin beta 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040056 Ppfibp2-201 ENSMUSG00000036528 10090 + 7:107595051-107744894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000040056
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000040056 2.178±1.02 24.913±6.50 1.806±0.00 3.371±2.25 2.522±0.00 1.614±0.36 4.282±0.74 3.612±1.12 0.897±0.03 2.019±1.29 22.782±18.07 3.234±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D4 CIL_0000D4_0003 CGP 7:107567446-107748582

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008907 IEA integrase activity
GO:0015074 IEA DNA integration
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299492 PPFIBP2-001 protein_coding Homo_sapiens 0 3109
ENST00000524495 PPFIBP2-027 processed_transcript Homo_sapiens 0 678
ENST00000524548 PPFIBP2-029 protein_coding Homo_sapiens 0 444
ENST00000525597 PPFIBP2-017 protein_coding Homo_sapiens 0 566
ENST00000526046 PPFIBP2-014 protein_coding Homo_sapiens 0 248
ENST00000526873 PPFIBP2-011 protein_coding Homo_sapiens 0 333
ENST00000527790 PPFIBP2-013 protein_coding Homo_sapiens 0 656
ENST00000528883 PPFIBP2-007 protein_coding Homo_sapiens 0 2507
ENST00000528929 PPFIBP2-026 retained_intron Homo_sapiens 0 405
ENST00000528947 PPFIBP2-012 protein_coding Homo_sapiens 0 333
ENST00000529575 PPFIBP2-015 protein_coding Homo_sapiens 0 800
ENST00000530081 PPFIBP2-023 protein_coding Homo_sapiens 0 364
ENST00000530181 PPFIBP2-008 protein_coding Homo_sapiens 0 2423
ENST00000530189 PPFIBP2-019 retained_intron Homo_sapiens 0 279
ENST00000530582 PPFIBP2-009 processed_transcript Homo_sapiens 0 1677
ENST00000532112 PPFIBP2-025 retained_intron Homo_sapiens 0 353
ENST00000532172 PPFIBP2-024 retained_intron Homo_sapiens 5e-30 135
ENST00000532926 PPFIBP2-004 processed_transcript Homo_sapiens 1e-39 169
ENST00000533792 PPFIBP2-003 protein_coding Homo_sapiens 0 2702
ENST00000534409 PPFIBP2-022 protein_coding Homo_sapiens 0 542

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