C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ARP1 actin-related protein 1 homolog B, centractin beta (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000289228 ACTR1B-001 ENSG00000115073 9606 - 2:97655963-97664107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289228
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289228 21.014±0.00 23.630±0.00 1.501±0.00 29.369±18.07 12.212±11.20 13.549±11.20 11.847±10.15 16.934±12.21 10.379±6.59 6.695±5.47 16.367±9.67 23.418±11.60 17.929±6.24 15.573±8.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002U7 CIL_0002U7_0001 CGP 2:97646040-97664107
CIL_0002U8 CIL_0002U8_0001 CGP 2:97655963-97739862

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005869 TAS dynactin complex
GO:0016020 IDA membrane
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043951 Actr1b-001 protein_coding Mus_musculus 0 1596
ENSMUST00000040270 Actr1a-201 protein_coding Mus_musculus 0 830
ENSMUST00000159448 Actr1b-002 protein_coding Mus_musculus 0 708
ENSMUST00000160084 Actr1b-007 protein_coding Mus_musculus 0 599
ENSMUST00000162684 Actr1b-008 retained_intron Mus_musculus 0 324
ENSMUST00000160043 Actr1b-006 retained_intron Mus_musculus 0 278
ENSMUST00000159675 Actr1b-005 retained_intron Mus_musculus 0 237
ENSMUST00000162662 Actr1b-003 processed_transcript Mus_musculus 0 346

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