C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041385 Arhgap27-005 ENSMUSG00000034255 10090 - 11:103331500-103344702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041385
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041385 7.849±1.45 6.497±0.47 8.982±0.09 1.965±0.10 16.412±3.55 53.468±5.54 3.845±1.27 11.333±0.63 1.850±0.56 19.645±0.55 2.852±0.00 7.534±1.51 14.753±8.47 0.541±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S1 CIL_0002S1_0002 CGP 11:103219762-103363692
CIL_0004D9 CIL_0004D9_0003 CGP 11:103331497-103412687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 ISS intracellular
GO:0005737 IEA cytoplasm
GO:0006898 ISS receptor-mediated endocytosis
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0017124 ISS SH3 domain binding
GO:0030675 ISS Rac GTPase activator activity
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0043089 ISS positive regulation of Cdc42 GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376922 ARHGAP27-001 protein_coding Homo_sapiens 0 1314
ENST00000428638 ARHGAP27-202 protein_coding Homo_sapiens 0 1314
ENST00000524404 ARHGAP27-005 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000526484 ARHGAP27-007 retained_intron Homo_sapiens 0 318
ENST00000527678 ARHGAP27-012 retained_intron Homo_sapiens 0 442
ENST00000528384 ARHGAP27-006 protein_coding Homo_sapiens 0 1314
ENST00000529357 ARHGAP27-002 retained_intron Homo_sapiens 0 1123
ENST00000531735 ARHGAP27-010 retained_intron Homo_sapiens 0 1249
ENST00000532038 ARHGAP27-003 protein_coding Homo_sapiens 0 2049
ENST00000532667 ARHGAP27-008 retained_intron Homo_sapiens 0 241
ENST00000532891 ARHGAP27-009 protein_coding Homo_sapiens 0 1941
ENST00000581991 ARHGAP27-015 retained_intron Homo_sapiens 0 507
ENST00000582826 ARHGAP27-013 processed_transcript Homo_sapiens 0 322
ENST00000590026 ARHGAP27-017 retained_intron Homo_sapiens 0 359
ENST00000610792 ARHGAP27-203 protein_coding Homo_sapiens 0 1314
ENST00000612916 AC217778.3-202 protein_coding Homo_sapiens 0 1314
ENST00000616021 ARHGAP27-205 protein_coding Homo_sapiens 0 1314
ENST00000618949 AC217778.3-201 protein_coding Homo_sapiens 0 1314

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