C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376922 ARHGAP27-001 ENSG00000159314 9606 - 17:45393909-45425631 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverOvaryPlacentaTestisENST00000376922
Transcript ID Adrenal Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000376922 4.232±0.00 1.567±0.00 2.459±0.60 1.870±0.00 4.353±4.17 0.997±0.00 4.265±2.42 4.975±1.28 1.630±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S1 CIL_0002S1_0001 CGP 17:45263121-45434421
CIL_0004D9 CIL_0004D9_0002 CGP 17:45393902-45490749

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 ISS:IEA intracellular
GO:0005737 IEA cytoplasm
GO:0006898 ISS receptor-mediated endocytosis
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0017124 ISS SH3 domain binding
GO:0030675 ISS Rac GTPase activator activity
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0043089 ISS positive regulation of Cdc42 GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041385 Arhgap27-005 protein_coding Mus_musculus 0 1314
ENSMUST00000107024 Arhgap27-001 protein_coding Mus_musculus 0 1314
ENSMUST00000116102 Arhgap27-011 retained_intron Mus_musculus 0 1251
ENSMUST00000136491 Arhgap27-004 protein_coding Mus_musculus 0 503
ENSMUST00000139830 Arhgap27-006 retained_intron Mus_musculus 0 355
ENSMUST00000124490 Arhgap27-007 retained_intron Mus_musculus 0 250

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