C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004D9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000086142-ENSDARG00000063247 CGP 7955 12:5811858-5937544
GeneTranscriptPositionBiotype
ENSDARG00000063247 (plekhm1)
pleckstrin homology domain containing, family M (with RUN domain) member 1 		ENSDART00000092241 (plekhm1-201) 5895116-5937493 protein_coding
ENSDART00000129644 (plekhm1-202) 5895116-5929864 protein_coding
ENSDART00000145149 (plekhm1-001) 5895113-5937544 protein_coding
ENSDARG00000086142 (arhgap27)
Rho GTPase activating protein 27 		ENSDART00000126361 (arhgap27-201) 5811858-5873392 protein_coding
ENSDART00000152532 (arhgap27-001) 5813064-5886480 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004D9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159314-ENSG00000225190 CGP 9606 17:45393902-45490749
GeneTranscriptPositionBiotype
ENSG00000225190 (PLEKHM1)
pleckstrin homology domain containing, family M (with RUN domain) member 1 		ENST00000430334 (PLEKHM1-001) 45435900-45490744 protein_coding
ENST00000446609 (PLEKHM1-004) 45440163-45487858 nonsense_mediated_decay
ENST00000579131 (PLEKHM1-012) 45437916-45441059 processed_transcript
ENST00000579197 (PLEKHM1-003) 45435904-45490728 nonsense_mediated_decay
ENST00000580205 (PLEKHM1-006) 45452938-45460432 processed_transcript
ENST00000580404 (PLEKHM1-008) 45435903-45446273 processed_transcript
ENST00000581448 (PLEKHM1-002) 45437471-45490729 nonsense_mediated_decay
ENST00000581932 (PLEKHM1-005) 45477074-45482525 retained_intron
ENST00000582035 (PLEKHM1-007) 45452938-45454771 retained_intron
ENST00000582119 (PLEKHM1-010) 45468246-45487862 processed_transcript
ENST00000583150 (PLEKHM1-013) 45439615-45448112 processed_transcript
ENST00000584420 (PLEKHM1-009) 45475211-45490738 protein_coding
ENST00000585506 (PLEKHM1-019) 45439514-45440373 retained_intron
ENST00000586084 (PLEKHM1-016) 45475696-45490741 nonsense_mediated_decay
ENST00000586562 (PLEKHM1-014) 45475597-45490749 processed_transcript
ENST00000589780 (PLEKHM1-015) 45475366-45490741 protein_coding
ENST00000590991 (PLEKHM1-018) 45439546-45445507 nonsense_mediated_decay
ENST00000591580 (PLEKHM1-017) 45437549-45445533 protein_coding
ENSG00000267344 (CTB-39G8.3)
 ENST00000592389 (CTB-39G8.3-001) 45396932-45397477 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004D9_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034255-ENSMUSG00000034247 CGP 10090 11:103331497-103412687
GeneTranscriptPositionBiotype
ENSMUSG00000034247 (Plekhm1)
pleckstrin homology domain containing, family M (with RUN domain) member 1 		ENSMUST00000041272 (Plekhm1-001) 103364275-103412687 protein_coding
ENSMUST00000184350 (Plekhm1-002) 103366617-103394768 nonsense_mediated_decay
ENSMUSG00000034255 (Arhgap27)
Rho GTPase activating protein 27 		ENSMUST00000041385 (Arhgap27-005) 103331500-103344702 protein_coding
ENSMUST00000092557 (Arhgap27-002) 103359739-103363464 protein_coding
ENSMUST00000107023 (Arhgap27-003) 103340135-103356375 protein_coding
ENSMUST00000107024 (Arhgap27-001) 103331497-103360900 protein_coding
ENSMUST00000116102 (Arhgap27-011) 103331498-103363692 retained_intron
ENSMUST00000124490 (Arhgap27-007) 103337777-103339303 retained_intron
ENSMUST00000136491 (Arhgap27-004) 103339229-103356361 protein_coding
ENSMUST00000139830 (Arhgap27-006) 103335268-103339719 retained_intron
ENSMUST00000144194 (Arhgap27-008) 103333465-103334089 retained_intron
ENSMUST00000150122 (Arhgap27-009) 103333166-103334110 retained_intron
ENSMUST00000163250 (Arhgap27-010) 103333229-103333395 processed_transcript
ENSMUSG00000085360 (Arhgap27os2)
Rho GTPase activating protein 27, opposite strand 2 		ENSMUST00000123812 (Arhgap27os2-001) 103355701-103361092 antisense
ENSMUSG00000085887 (Arhgap27os3)
Rho GTPase activating protein 27, opposite strand 3 		ENSMUST00000124462 (Arhgap27os3-001) 103344753-103350124 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004D9_0001ENSDARG00000063247ENSDART00000092241ENSDART00000129644ENSDART00000145149ENSDARG00000086142ENSDART00000126361ENSDART00000152532CIL_0004D9_0002ENSG00000225190ENST00000430334ENST00000446609ENST00000579131ENST00000579197ENST00000580205ENST00000580404ENST00000581448ENST00000581932ENST00000582035ENST00000582119ENST00000583150ENST00000584420ENST00000585506ENST00000586084ENST00000586562ENST00000589780ENST00000590991ENST00000591580ENSG00000267344ENST00000592389CIL_0004D9_0003ENSMUSG00000034247ENSMUST00000041272ENSMUST00000184350ENSMUSG00000034255ENSMUST00000041385ENSMUST00000092557ENSMUST00000107023ENSMUST00000107024ENSMUST00000116102ENSMUST00000124490ENSMUST00000136491ENSMUST00000139830ENSMUST00000144194ENSMUST00000150122ENSMUST00000163250ENSMUSG00000085360ENSMUST00000123812ENSMUSG00000085887ENSMUST00000124462
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004D9_0001ENSDARG00000063247ENSDART00000092241ENSDART00000129644ENSDART00000145149ENSDARG00000086142ENSDART00000126361ENSDART00000152532CIL_0004D9_0002ENSG00000225190ENST00000430334ENST00000579197ENST00000580205ENST00000580404ENST00000581448ENST00000581932ENST00000582119ENST00000585506ENST00000586084ENSG00000267344ENST00000592389CIL_0004D9_0003ENSMUSG00000034247ENSMUST00000041272ENSMUST00000184350ENSMUSG00000034255ENSMUST00000041385ENSMUST00000116102ENSMUSG00000085360ENSMUST00000123812ENSMUSG00000085887ENSMUST00000124462
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000063247 ENSDART00000092241 N/A N/A N/A 0.953±0.00 N/A N/A 1.378±0.54 2.930±1.70 N/A N/A N/A N/A N/A N/A
ENSDART00000129644 N/A N/A N/A 3.659±0.00 N/A N/A 0.841±0.08 N/A N/A N/A 4.214±0.00 N/A N/A N/A
ENSDART00000145149 N/A N/A N/A 4.158±1.89 N/A N/A 4.373±1.22 3.437±2.86 N/A N/A 3.397±0.00 N/A N/A N/A
ENSDARG00000086142 ENSDART00000126361 N/A N/A N/A 5.607±0.97 N/A N/A 1.579±0.67 5.935±3.74 N/A N/A 1.063±0.00 N/A N/A N/A
ENSDART00000152532 N/A N/A N/A N/A N/A N/A 0.346±0.24 N/A 0.072±0.00 N/A 0.132±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000225190 ENST00000430334 3.623±0.00 1.889±0.00 N/A 1.470±0.44 3.493±0.91 1.308±0.36 1.851±0.00 1.554±0.00 0.888±0.37 2.924±1.28 3.067±0.00 2.291±0.62 2.255±0.62 1.461±0.09
ENST00000446609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.789±0.00 0.537±0.00 N/A
ENST00000580205 N/A N/A N/A N/A N/A N/A N/A 0.562±0.00 N/A N/A N/A N/A N/A N/A
ENST00000580404 3.601±0.00 4.807±0.00 N/A N/A 6.114±0.00 3.871±0.00 2.280±0.00 3.673±0.00 2.612±0.00 5.045±0.00 3.898±0.00 4.701±1.67 2.765±1.09 1.186±0.00
ENST00000581448 N/A N/A 0.992±0.00 N/A N/A 0.861±0.00 N/A 1.005±0.00 N/A 1.847±0.00 2.612±0.00 2.143±0.00 N/A N/A
ENST00000581932 N/A N/A 1.786±0.00 1.498±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582119 N/A N/A N/A N/A N/A N/A N/A N/A 4.052±0.00 N/A N/A N/A N/A N/A
ENST00000583150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585506 N/A N/A N/A N/A N/A N/A N/A 3.787±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586084 N/A N/A N/A N/A N/A N/A 1.492±0.00 N/A N/A N/A N/A 6.433±0.00 N/A N/A
ENST00000586562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267344 ENST00000592389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.429±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034247 ENSMUST00000041272 8.828±0.46 7.974±1.44 9.010±0.27 2.691±0.40 8.575±1.30 18.792±1.37 2.328±0.33 7.399±1.88 3.362±0.76 11.681±2.74 3.726±0.79 6.542±2.29 10.230±6.98 1.793±0.93
ENSMUST00000184350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.925±0.00 N/A N/A N/A
ENSMUSG00000034255 ENSMUST00000041385 7.849±1.45 6.497±0.47 8.982±0.09 1.965±0.10 16.412±3.55 53.468±5.54 3.845±1.27 11.333±0.63 1.850±0.56 19.645±0.55 2.852±0.00 7.534±1.51 14.753±8.47 0.541±0.00
ENSMUST00000092557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000116102 N/A N/A N/A N/A N/A N/A 1.030±0.08 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085360 ENSMUST00000123812 N/A 13.955±2.87 N/A N/A 14.828±0.00 N/A N/A 10.760±0.00 N/A 23.510±3.03 N/A 12.641±1.80 N/A N/A
ENSMUSG00000085887 ENSMUST00000124462 0.199±0.05 0.054±0.02 0.139±0.00 0.045±0.00 1.384±0.61 0.718±0.15 0.137±0.02 0.259±0.08 0.098±0.05 0.773±0.08 0.039±0.03 0.130±0.07 0.091±0.04 0.025±0.01

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