C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beclin 1, autophagy related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041403 Becn1-002 ENSMUSG00000035086 10090 - 11:101288262-101302286 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041403
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041403 15.297±2.87 14.408±3.50 17.979±1.38 13.071±0.82 9.164±0.34 16.353±2.63 11.182±4.51 12.450±0.00 5.996±0.96 16.528±1.85 13.682±1.64 14.702±2.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SB CIL_0005SB_0002 CGP 11:101277968-101296317
CIL_0005S8 CIL_0005S8_0002 CGP 11:101279012-101302286
CIL_0005S9 CIL_0005S9_0002 CGP 11:101285952-101323537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0005856 ISS cytoskeleton
GO:0006914 IDA autophagy
GO:0007040 IMP lysosome organization
GO:0008285 IDA negative regulation of cell proliferation
GO:0016020 ISS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016239 IGI positive regulation of macroautophagy
GO:0043234 IDA protein complex
GO:0045335 IDA phagocytic vesicle
GO:0048666 IMP neuron development
GO:0050435 IMP beta-amyloid metabolic process
GO:0050790 IMP regulation of catalytic activity
GO:0051707 IDA response to other organism

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315066 CNTD1-003 processed_transcript Homo_sapiens 0 501
ENST00000361523 BECN1-002 protein_coding Homo_sapiens 0 1705
ENST00000438274 BECN1-003 protein_coding Homo_sapiens 0 669
ENST00000543382 BECN1-004 retained_intron Homo_sapiens 0 1677
ENST00000585515 BECN1-011 retained_intron Homo_sapiens 0 459
ENST00000586589 BECN1-019 protein_coding Homo_sapiens 0 832
ENST00000586754 BECN1-013 processed_transcript Homo_sapiens 0 416
ENST00000587880 BECN1-020 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000588276 BECN1-021 protein_coding Homo_sapiens 0 499
ENST00000588408 CNTD1-001 protein_coding Homo_sapiens 5e-39 167
ENST00000589492 BECN1-016 retained_intron Homo_sapiens 0 294
ENST00000589493 BECN1-014 retained_intron Homo_sapiens 0 584
ENST00000589636 BECN1-008 protein_coding Homo_sapiens 0 272
ENST00000589663 BECN1-017 protein_coding Homo_sapiens 0 344
ENST00000590099 BECN1-001 protein_coding Homo_sapiens 0 1705
ENST00000590185 BECN1-022 retained_intron Homo_sapiens 0 449
ENST00000590764 BECN1-018 protein_coding Homo_sapiens 0 708
ENST00000591085 BECN1-010 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000591307 BECN1-007 retained_intron Homo_sapiens 0 324
ENST00000593112 BECN1-006 retained_intron Homo_sapiens 0 414
ENST00000593205 BECN1-012 protein_coding Homo_sapiens 0 497
ENST00000612631 BECN1-009 protein_coding Homo_sapiens 0 209
ENST00000617806 BECN1-005 retained_intron Homo_sapiens 0 793

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