C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041826 Rnf13-201 ENSMUSG00000036503 10090 + 3:57736066-57835233 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041826
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041826 29.144±3.70 51.256±14.43 30.772±3.26 12.906±3.17 21.382±3.78 14.681±3.53 17.952±3.96 46.574±8.63 30.076±18.30 28.185±1.09 8.164±2.41 26.243±8.49 12.621±4.83 5.358±2.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R6 CIL_0002R6_0002 CGP 3:57666485-57835233
CIL_0002R5 CIL_0002R5_0002 CGP 3:57736066-57847564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0005765 IDA lysosomal membrane
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0031902 IDA late endosome membrane
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344229 RNF13-003 protein_coding Homo_sapiens 0 1871
ENST00000361785 RNF13-002 protein_coding Homo_sapiens 0 1471
ENST00000392894 RNF13-001 protein_coding Homo_sapiens 0 1903
ENST00000459632 RNF13-010 protein_coding Homo_sapiens 0 750
ENST00000466478 RNF13-006 protein_coding Homo_sapiens 0 331
ENST00000466795 RNF13-011 protein_coding Homo_sapiens 0 737
ENST00000467977 RNF13-008 protein_coding Homo_sapiens 0 793
ENST00000467996 RNF13-016 nonsense_mediated_decay Homo_sapiens 0 920
ENST00000468289 RNF13-018 protein_coding Homo_sapiens 0 508
ENST00000468648 RNF13-009 protein_coding Homo_sapiens 0 523
ENST00000470151 RNF13-005 protein_coding Homo_sapiens 0 372
ENST00000474348 RNF13-014 nonsense_mediated_decay Homo_sapiens 0 1182
ENST00000481241 RP11-259P15.4-001 processed_pseudogene Homo_sapiens 0 726
ENST00000482083 RNF13-017 protein_coding Homo_sapiens 0 872
ENST00000490631 RNF13-015 protein_coding Homo_sapiens 0 616
ENST00000491086 RNF13-007 protein_coding Homo_sapiens 0 1166
ENST00000493238 RNF13-019 retained_intron Homo_sapiens 0 586

Loading