C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042470 Zkscan2-001 ENSMUSG00000030757 10090 - 7:123479516-123500449 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000042470
Transcript ID Adipose Brain Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000042470 0.026±0.01 2.592±0.34 0.024±0.00 0.026±0.00 0.040±0.02 0.012±0.00 0.030±0.00 0.192±0.17 0.149±0.08 0.849±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KP CIL_0005KP_0002 CGP 7:123462294-123500449
CIL_0003X1 CIL_0003X1_0002 CGP 7:123479516-124398989

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328086 ZKSCAN2-001 protein_coding Homo_sapiens 0 2643
ENST00000565590 ZKSCAN2-003 retained_intron Homo_sapiens 0 1219
ENST00000569150 ZKSCAN2-002 nonsense_mediated_decay Homo_sapiens 0 2156
ENST00000601863 AF186192.2-201 protein_coding Homo_sapiens 0.0000003 60

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