C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417403 ABCA13-002 ENSG00000179869 9606 + 7:48171458-48272995 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLungENST00000417403
Transcript ID Adipose Bladder Brain Breast Kidney Lung
ENST00000417403 0.075±0.00 0.393±0.00 0.060±0.00 0.032±0.00 0.113±0.00 1.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S4 CIL_0000S4_0001 CGP 7:48088628-48647496
CIL_0000S3 CIL_0000S3_0001 CGP 7:48171458-49921950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042740 Abca13-001 protein_coding Mus_musculus 0 701
ENSMUST00000151522 Abca13-003 protein_coding Mus_musculus 0 351

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