C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: patatin-like phospholipase domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043082 Pnpla8-001 ENSMUSG00000036257 10090 + 12:44269186-44312244 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043082
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043082 19.119±5.28 6.135±2.42 16.839±0.20 15.943±3.04 12.025±5.08 4.657±1.30 15.090±2.83 12.169±2.97 11.343±4.49 8.737±1.44 26.921±2.79 9.343±4.32 13.173±5.03 10.689±3.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PF CIL_0008PF_0002 VISTA 12:44102519-44705770
CIL_0008CE CIL_0008CE_0002 VISTA 12:44102792-44705590
CIL_00057O CIL_00057O_0002 CGP 12:44221370-44601846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001516 IEA prostaglandin biosynthetic process
GO:0004622 IEA lysophospholipase activity
GO:0005622 ISS intracellular
GO:0005777 IEA peroxisome
GO:0005778 ISS peroxisomal membrane
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006631 ISS fatty acid metabolic process
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019369 IEA arachidonic acid metabolic process
GO:0034638 IEA phosphatidylcholine catabolic process
GO:0043651 IEA linoleic acid metabolic process
GO:0046338 IEA phosphatidylethanolamine catabolic process
GO:0047499 ISS calcium-independent phospholipase A2 activity
GO:0050482 IEA arachidonic acid secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257694 PNPLA8-001 protein_coding Homo_sapiens 0 2479
ENST00000415498 PNPLA8-007 protein_coding Homo_sapiens 0 226
ENST00000422087 PNPLA8-002 protein_coding Homo_sapiens 0 2481
ENST00000422141 RP3-428A13.1-001 processed_pseudogene Homo_sapiens 0 893
ENST00000426128 PNPLA8-006 protein_coding Homo_sapiens 0 1707
ENST00000427008 PNPLA8-009 protein_coding Homo_sapiens 0 628
ENST00000436062 PNPLA8-003 protein_coding Homo_sapiens 0 2503
ENST00000453085 PNPLA8-005 protein_coding Homo_sapiens 0 2117
ENST00000453144 PNPLA8-004 protein_coding Homo_sapiens 0 2316
ENST00000462466 PNPLA8-012 retained_intron Homo_sapiens 0 496
ENST00000476592 PNPLA8-011 processed_transcript Homo_sapiens 0 710
ENST00000483879 PNPLA8-010 processed_transcript Homo_sapiens 0 496
ENST00000489738 PNPLA8-008 processed_transcript Homo_sapiens 0 326

Loading