| Transcript ID | Colon |
|---|---|
| ENST00000508461 | 1.274±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | SMG7 nonsense mediated mRNA decay factor | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000508461  |
SMG7-011 |
ENSG00000116698 |
9606 | + |
1:183472500-183552263  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0001BJ | CIL_0001BJ_0002 | CGP | 1:183248237-183598246 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000184 | TAS | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0005737 | IDA | cytoplasm |
| GO:0005829 | TAS | cytosol |
| GO:0006406 | TAS | mRNA export from nucleus |
| GO:0010467 | TAS | gene expression |
| GO:0016070 | TAS | RNA metabolic process |
| GO:0016071 | TAS | mRNA metabolic process |
| GO:0035303 | TAS | regulation of dephosphorylation |
| GO:0045111 | IDA | intermediate filament cytoskeleton |
| GO:0051721 | IDA | protein phosphatase 2A binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000073441
|
Smg7-002 | protein_coding | Mus_musculus | 0 | 3947 |
|
ENSMUST00000111836
|
Smg7-001 | protein_coding | Mus_musculus | 0 | 3025 |
|
ENSMUST00000043560
|
Smg7-003 | protein_coding | Mus_musculus | 0 | 3025 |
|
ENSMUST00000186692
|
Smg7-004 | processed_transcript | Mus_musculus | 0 | 741 |
|
ENSMUST00000186900
|
Smg7-005 | processed_transcript | Mus_musculus | 0 | 444 |
|
ENSMUST00000188937
|
Smg7-006 | retained_intron | Mus_musculus | 0 | 207 |
