C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG7 nonsense mediated mRNA decay factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419169 SMG7-003 ENSG00000116698 9606 + 1:183472502-183546129 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverOvaryENST00000419169
Transcript ID Breast Heart Kidney Liver Ovary
ENST00000419169 2.537±0.00 0.853±0.00 1.371±0.00 1.449±0.00 3.477±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BJ CIL_0001BJ_0002 CGP 1:183248237-183598246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111836 Smg7-001 protein_coding Mus_musculus 0 3530
ENSMUST00000043560 Smg7-003 protein_coding Mus_musculus 0 3469
ENSMUST00000073441 Smg7-002 protein_coding Mus_musculus 0 2394
ENSMUST00000186692 Smg7-004 processed_transcript Mus_musculus 0 741
ENSMUST00000186900 Smg7-005 processed_transcript Mus_musculus 0 556
ENSMUST00000188937 Smg7-006 retained_intron Mus_musculus 0 411

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