C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 205
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043815 Nup205-201 ENSMUSG00000038759 10090 + 6:35177430-35247449 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043815 8.197±3.15 5.781±0.74 3.628±0.27 6.838±3.49 5.925±1.28 4.052±0.52 2.491±0.43 3.543±0.53 4.865±3.44 5.232±0.93 1.314±0.53 11.544±2.50 10.412±6.31 32.179±14.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002H2 CIL_0002H2_0002 CGP 6:35022066-35247590
CIL_00082N CIL_00082N_0002 VISTA 6:35053329-35655339

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016020 IEA membrane
GO:0017056 IEA structural constituent of nuclear pore
GO:0031965 IEA nuclear membrane
GO:0034399 IEA nuclear periphery
GO:0051292 IEA nuclear pore complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285968 NUP205-001 protein_coding Homo_sapiens 0 7020
ENST00000462316 NUP205-011 retained_intron Homo_sapiens 0 588
ENST00000463247 NUP205-012 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000472132 NUP205-015 protein_coding Homo_sapiens 0 564
ENST00000477620 NUP205-007 nonsense_mediated_decay Homo_sapiens 0 1507
ENST00000607647 NUP205-016 retained_intron Homo_sapiens 0 4039

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