C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog gene family, member T2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043897 Rhot2-001 ENSMUSG00000025733 10090 - 17:25838457-25844851 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043897 19.788±5.03 91.106±15.00 21.689±1.40 22.832±14.45 29.365±7.95 72.490±2.09 56.154±16.48 54.129±3.68 32.744±5.71 27.079±2.56 23.589±4.94 38.985±12.94 15.908±8.42 18.162±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GN CIL_0003GN_0002 CGP 17:25834465-25841763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005509 IEA calcium ion binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006184 IEA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0019725 ISS cellular homeostasis
GO:0031307 ISS integral component of mitochondrial outer membrane
GO:0047497 ISS mitochondrion transport along microtubule
GO:0097345 ISS mitochondrial outer membrane permeabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315082 RHOT2-001 protein_coding Homo_sapiens 0 1592
ENST00000561929 RHOT2-014 protein_coding Homo_sapiens 0 278
ENST00000561983 RHOT2-018 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000562333 RHOT2-017 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000562598 RHOT2-016 retained_intron Homo_sapiens 0 409
ENST00000562708 RHOT2-008 retained_intron Homo_sapiens 2e-32 143
ENST00000563134 RHOT2-024 protein_coding Homo_sapiens 0 688
ENST00000563637 RHOT2-013 nonsense_mediated_decay Homo_sapiens 5e-31 139
ENST00000567017 RHOT2-005 retained_intron Homo_sapiens 0 300
ENST00000568950 RHOT2-020 retained_intron Homo_sapiens 0 881
ENST00000569675 RHOT2-002 retained_intron Homo_sapiens 0 257
ENST00000570092 RHOT2-009 retained_intron Homo_sapiens 2e-32 143
ENST00000570280 RHOT2-015 nonsense_mediated_decay Homo_sapiens 3e-31 139
ENST00000602564 RHOT2-028 retained_intron Homo_sapiens 2e-30 139

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