C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein L47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043966 Mrpl47-001 ENSMUSG00000037531 10090 - 3:32725397-32737147 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverLungOvaryPlacentaTestisENSMUST00000043966
Transcript ID Bladder Brain Breast Liver Lung Ovary Placenta Testis
ENSMUST00000043966 3.924±0.09 4.218±1.39 6.343±0.00 5.938±1.71 2.754±0.00 4.389±0.54 5.058±1.28 5.420±1.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FG CIL_0001FG_0002 CGP 3:32580332-32726968
CIL_00049Q CIL_00049Q_0003 CGP 3:32708546-32737147
CIL_00049U CIL_00049U_0003 CGP 3:32725397-32751566

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005761 IEA mitochondrial ribosome
GO:0006412 IEA translation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392662 ACTL6A-201 protein_coding Homo_sapiens 0 451
ENST00000429709 ACTL6A-001 protein_coding Homo_sapiens 0 451
ENST00000450518 ACTL6A-002 protein_coding Homo_sapiens 0 451
ENST00000461125 ACTL6A-016 retained_intron Homo_sapiens 0 383

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